Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1737

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1735 and GFF1736 overlap by 1 nucleotidesGFF1736 and GFF1737 are separated by 50 nucleotidesGFF1737 and GFF1738 are separated by 14 nucleotidesGFF1738 and GFF1739 are separated by 94 nucleotides GFF1735 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 36,390 to 37,349 GFF1735 GFF1736 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 37,349 to 38,239 GFF1736 GFF1737 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 38,290 to 39,099 GFF1737 GFF1738 - Phosphate transport system regulatory protein PhoU, at 39,114 to 39,839 GFF1738 GFF1739 - Putative phosphatase YieH, at 39,934 to 40,599 GFF1739 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1at 37.316 kb on + strandat 37.632 kb on + strand, within GFF1736at 37.667 kb on + strand, within GFF1736at 38.184 kb on + strandat 38.248 kb on + strandat 38.248 kb on + strandat 38.257 kb on + strandat 38.380 kb on + strand, within GFF1737at 38.380 kb on + strand, within GFF1737at 38.559 kb on + strand, within GFF1737at 38.647 kb on + strand, within GFF1737at 38.997 kb on + strand, within GFF1737at 39.001 kb on + strand, within GFF1737at 39.806 kb on + strandat 39.880 kb on + strandat 39.886 kb on + strandat 39.935 kb on + strandat 39.942 kb on + strandat 39.993 kb on + strandat 40.029 kb on + strand, within GFF1739

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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37,316 + -0.3
37,632 + GFF1736 0.32 +0.2
37,667 + GFF1736 0.36 -0.9
38,184 + -0.5
38,248 + +0.3
38,248 + +0.2
38,257 + +0.2
38,380 + GFF1737 0.11 -1.5
38,380 + GFF1737 0.11 -2.2
38,559 + GFF1737 0.33 -1.4
38,647 + GFF1737 0.44 -1.3
38,997 + GFF1737 0.87 -1.8
39,001 + GFF1737 0.88 -2.2
39,806 + -0.0
39,880 + +0.2
39,886 + -0.1
39,935 + -0.1
39,942 + -0.3
39,993 + +0.3
40,029 + GFF1739 0.14 +0.4

Or see this region's nucleotide sequence