Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1733 and GFF1734 are separated by 166 nucleotides GFF1734 and GFF1735 are separated by 135 nucleotides
GFF1733 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 33,674 to 35,047
GFF1733
GFF1734 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 35,214 to 36,254
GFF1734
GFF1735 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 36,390 to 37,349
GFF1735
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 34.229 kb on - strand, within GFF1733 at 34.402 kb on + strand, within GFF1733 at 34.449 kb on + strand, within GFF1733 at 34.449 kb on + strand, within GFF1733 at 34.537 kb on + strand, within GFF1733 at 34.537 kb on + strand, within GFF1733 at 34.598 kb on - strand, within GFF1733 at 34.610 kb on - strand, within GFF1733 at 34.626 kb on + strand, within GFF1733 at 34.643 kb on + strand, within GFF1733 at 34.643 kb on + strand, within GFF1733 at 34.644 kb on - strand, within GFF1733 at 34.880 kb on + strand, within GFF1733 at 34.881 kb on - strand, within GFF1733 at 35.006 kb on + strand at 35.134 kb on + strand at 35.134 kb on + strand at 35.134 kb on + strand at 35.134 kb on + strand at 35.136 kb on + strand at 35.136 kb on + strand at 35.136 kb on + strand at 35.136 kb on + strand at 35.137 kb on - strand at 35.137 kb on - strand at 35.137 kb on - strand at 35.170 kb on + strand at 35.170 kb on + strand at 35.213 kb on + strand at 35.213 kb on + strand at 35.730 kb on + strand, within GFF1734 at 35.780 kb on + strand, within GFF1734 at 35.839 kb on + strand, within GFF1734 at 36.059 kb on + strand, within GFF1734 at 36.129 kb on + strand, within GFF1734 at 36.165 kb on + strand at 36.481 kb on + strand at 36.566 kb on + strand, within GFF1735 at 36.594 kb on + strand, within GFF1735 at 36.788 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 37.016 kb on + strand, within GFF1735 at 37.019 kb on + strand, within GFF1735 at 37.082 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 34,229 - GFF1733 0.40 -0.3 34,402 + GFF1733 0.53 -0.2 34,449 + GFF1733 0.56 +0.5 34,449 + GFF1733 0.56 -0.3 34,537 + GFF1733 0.63 +0.3 34,537 + GFF1733 0.63 +0.0 34,598 - GFF1733 0.67 +0.2 34,610 - GFF1733 0.68 -0.1 34,626 + GFF1733 0.69 +1.2 34,643 + GFF1733 0.71 -0.3 34,643 + GFF1733 0.71 -0.0 34,644 - GFF1733 0.71 -0.3 34,880 + GFF1733 0.88 -0.5 34,881 - GFF1733 0.88 +0.4 35,006 + +0.1 35,134 + -0.2 35,134 + -0.1 35,134 + +0.4 35,134 + -0.3 35,136 + -0.2 35,136 + +0.2 35,136 + -0.3 35,136 + +0.1 35,137 - -0.6 35,137 - -0.0 35,137 - -0.7 35,170 + -0.3 35,170 + -0.5 35,213 + -1.4 35,213 + +0.0 35,730 + GFF1734 0.50 -0.6 35,780 + GFF1734 0.54 -1.0 35,839 + GFF1734 0.60 +0.1 36,059 + GFF1734 0.81 -1.4 36,129 + GFF1734 0.88 -1.3 36,165 + -0.8 36,481 + -1.6 36,566 + GFF1735 0.18 -2.8 36,594 + GFF1735 0.21 -1.4 36,788 + GFF1735 0.41 -2.3 36,939 + GFF1735 0.57 -1.3 36,939 + GFF1735 0.57 -1.8 36,939 + GFF1735 0.57 -1.3 37,016 + GFF1735 0.65 -1.5 37,019 + GFF1735 0.66 -2.1 37,082 + GFF1735 0.72 -1.8 37,146 + GFF1735 0.79 +0.6 37,146 + GFF1735 0.79 -0.1 37,170 + GFF1735 0.81 -0.5 37,170 + GFF1735 0.81 -0.4
Or see this region's nucleotide sequence