Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF167 and GFF168 are separated by 20 nucleotides GFF168 and GFF169 are separated by 201 nucleotides GFF169 and GFF170 are separated by 92 nucleotides GFF170 and GFF171 are separated by 13 nucleotides GFF171 and GFF172 are separated by 44 nucleotides
GFF167 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 159,428 to 160,033
GFF167
GFF168 - hypothetical protein, at 160,054 to 160,167
GFF168
GFF169 - Sugar-phosphate stress protein SgrT (embedded in SgrS), at 160,369 to 160,491
GFF169
GFF170 - SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA, at 160,584 to 162,242
GFF170
GFF171 - hypothetical protein, at 162,256 to 162,375
GFF171
GFF172 - Thiamin ABC transporter, substrate-binding component, at 162,420 to 163,403
GFF172
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -1
0
1
2
3 at 159.646 kb on - strand, within GFF167 at 159.721 kb on + strand, within GFF167 at 159.722 kb on - strand, within GFF167 at 159.759 kb on - strand, within GFF167 at 160.024 kb on + strand at 160.295 kb on - strand at 160.317 kb on + strand at 160.317 kb on + strand at 160.337 kb on + strand at 160.470 kb on - strand, within GFF169 at 160.491 kb on + strand at 160.535 kb on - strand at 160.613 kb on + strand at 160.701 kb on - strand at 160.706 kb on + strand at 160.707 kb on - strand at 160.707 kb on - strand at 161.000 kb on - strand, within GFF170 at 161.053 kb on + strand, within GFF170 at 161.131 kb on - strand, within GFF170 at 161.223 kb on + strand, within GFF170 at 161.242 kb on + strand, within GFF170 at 161.409 kb on - strand, within GFF170 at 161.470 kb on + strand, within GFF170 at 161.592 kb on + strand, within GFF170 at 161.595 kb on + strand, within GFF170 at 161.685 kb on + strand, within GFF170 at 161.704 kb on + strand, within GFF170 at 161.958 kb on - strand, within GFF170 at 162.007 kb on + strand, within GFF170 at 162.188 kb on + strand at 162.189 kb on - strand at 162.280 kb on - strand, within GFF171 at 162.284 kb on + strand, within GFF171 at 162.492 kb on + strand at 162.698 kb on + strand, within GFF172 at 163.140 kb on + strand, within GFF172 at 163.140 kb on + strand, within GFF172 at 163.141 kb on - strand, within GFF172 at 163.144 kb on + strand, within GFF172 at 163.144 kb on + strand, within GFF172 at 163.145 kb on - strand, within GFF172 at 163.150 kb on + strand, within GFF172 at 163.151 kb on - strand, within GFF172 at 163.151 kb on - strand, within GFF172
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 159,646 - GFF167 0.36 +0.3 159,721 + GFF167 0.48 -0.0 159,722 - GFF167 0.49 +0.2 159,759 - GFF167 0.55 +0.5 160,024 + +1.6 160,295 - -0.2 160,317 + +0.1 160,317 + +1.6 160,337 + +3.2 160,470 - GFF169 0.82 +0.5 160,491 + -0.4 160,535 - +0.4 160,613 + +0.1 160,701 - +0.2 160,706 + +0.2 160,707 - -0.6 160,707 - +0.8 161,000 - GFF170 0.25 -0.9 161,053 + GFF170 0.28 -0.8 161,131 - GFF170 0.33 +0.2 161,223 + GFF170 0.39 +0.2 161,242 + GFF170 0.40 +0.0 161,409 - GFF170 0.50 +1.5 161,470 + GFF170 0.53 +0.3 161,592 + GFF170 0.61 +0.5 161,595 + GFF170 0.61 +0.3 161,685 + GFF170 0.66 +1.0 161,704 + GFF170 0.68 +0.3 161,958 - GFF170 0.83 +0.1 162,007 + GFF170 0.86 +0.4 162,188 + -0.3 162,189 - -0.1 162,280 - GFF171 0.20 +0.1 162,284 + GFF171 0.23 +0.6 162,492 + +0.3 162,698 + GFF172 0.28 +0.1 163,140 + GFF172 0.73 +0.4 163,140 + GFF172 0.73 +0.3 163,141 - GFF172 0.73 +0.5 163,144 + GFF172 0.74 +0.8 163,144 + GFF172 0.74 +0.3 163,145 - GFF172 0.74 -0.3 163,150 + GFF172 0.74 +0.6 163,151 - GFF172 0.74 -0.2 163,151 - GFF172 0.74 -0.0
Or see this region's nucleotide sequence