Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1660 and GFF1661 overlap by 8 nucleotides GFF1661 and GFF1662 are separated by 193 nucleotides GFF1662 and GFF1663 are separated by 10 nucleotides
GFF1660 - Flagellar biosynthesis protein FlhA, at 44,633 to 46,711
GFF1660
GFF1661 - Flagellar biosynthesis protein FlhB, at 46,704 to 47,855
GFF1661
GFF1662 - Chemotaxis response - phosphatase CheZ, at 48,049 to 48,693
GFF1662
GFF1663 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 48,704 to 49,093
GFF1663
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 46.105 kb on + strand, within GFF1660 at 46.234 kb on + strand, within GFF1660 at 46.234 kb on + strand, within GFF1660 at 46.574 kb on + strand at 46.715 kb on + strand at 46.715 kb on + strand at 46.847 kb on - strand, within GFF1661 at 46.848 kb on + strand, within GFF1661 at 46.848 kb on + strand, within GFF1661 at 46.888 kb on + strand, within GFF1661 at 46.891 kb on - strand, within GFF1661 at 46.969 kb on - strand, within GFF1661 at 47.135 kb on + strand, within GFF1661 at 47.454 kb on - strand, within GFF1661 at 47.540 kb on + strand, within GFF1661 at 47.541 kb on - strand, within GFF1661 at 47.880 kb on - strand at 47.924 kb on - strand at 47.957 kb on + strand at 48.203 kb on - strand, within GFF1662 at 48.312 kb on + strand, within GFF1662 at 48.627 kb on + strand, within GFF1662 at 48.778 kb on - strand, within GFF1663
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 46,105 + GFF1660 0.71 +0.0 46,234 + GFF1660 0.77 -0.6 46,234 + GFF1660 0.77 +0.0 46,574 + -0.1 46,715 + -0.3 46,715 + +0.2 46,847 - GFF1661 0.12 +0.2 46,848 + GFF1661 0.12 +0.8 46,848 + GFF1661 0.12 +0.5 46,888 + GFF1661 0.16 +0.6 46,891 - GFF1661 0.16 +0.3 46,969 - GFF1661 0.23 +0.3 47,135 + GFF1661 0.37 +0.3 47,454 - GFF1661 0.65 +0.5 47,540 + GFF1661 0.73 +0.2 47,541 - GFF1661 0.73 +0.1 47,880 - +0.5 47,924 - -0.1 47,957 + +0.4 48,203 - GFF1662 0.24 +0.6 48,312 + GFF1662 0.41 +0.4 48,627 + GFF1662 0.90 +0.3 48,778 - GFF1663 0.19 +0.2
Or see this region's nucleotide sequence