Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF164

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF163 and GFF164 are separated by 21 nucleotidesGFF164 and GFF165 overlap by 1 nucleotides GFF163 - 2-isopropylmalate synthase (EC 2.3.3.13), at 155,352 to 156,164 GFF163 GFF164 - 2-isopropylmalate synthase (EC 2.3.3.13), at 156,186 to 156,923 GFF164 GFF165 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 156,923 to 158,014 GFF165 Position (kb) 156 157Strain fitness (log2 ratio) -1 0 1at 155.186 kb on + strandat 155.187 kb on - strandat 155.226 kb on - strandat 155.262 kb on + strandat 155.262 kb on + strandat 155.311 kb on + strandat 155.386 kb on + strandat 155.486 kb on - strand, within GFF163at 155.547 kb on - strand, within GFF163at 155.581 kb on + strand, within GFF163at 155.643 kb on - strand, within GFF163at 155.643 kb on - strand, within GFF163at 155.722 kb on - strand, within GFF163at 155.730 kb on - strand, within GFF163at 155.745 kb on + strand, within GFF163at 155.850 kb on - strand, within GFF163at 155.871 kb on + strand, within GFF163at 155.872 kb on - strand, within GFF163at 155.872 kb on - strand, within GFF163at 155.874 kb on - strand, within GFF163at 155.943 kb on - strand, within GFF163at 155.957 kb on + strand, within GFF163at 155.984 kb on - strand, within GFF163at 156.004 kb on + strand, within GFF163at 156.005 kb on - strand, within GFF163at 156.121 kb on + strandat 156.322 kb on + strand, within GFF164at 156.323 kb on - strand, within GFF164at 156.402 kb on + strand, within GFF164at 156.402 kb on + strand, within GFF164at 156.421 kb on - strand, within GFF164at 156.491 kb on + strand, within GFF164at 156.494 kb on + strand, within GFF164at 156.497 kb on + strand, within GFF164at 156.648 kb on + strand, within GFF164at 156.693 kb on - strand, within GFF164at 156.845 kb on + strand, within GFF164at 156.845 kb on + strand, within GFF164at 156.846 kb on - strand, within GFF164at 156.846 kb on - strand, within GFF164at 156.922 kb on - strandat 156.922 kb on - strandat 156.935 kb on + strandat 156.941 kb on - strandat 157.001 kb on - strandat 157.028 kb on - strandat 157.033 kb on + strand, within GFF165at 157.033 kb on + strand, within GFF165at 157.034 kb on - strand, within GFF165at 157.034 kb on - strand, within GFF165at 157.069 kb on + strand, within GFF165at 157.498 kb on + strand, within GFF165at 157.515 kb on + strand, within GFF165at 157.516 kb on - strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.595 kb on + strand, within GFF165at 157.596 kb on - strand, within GFF165at 157.596 kb on - strand, within GFF165at 157.596 kb on - strand, within GFF165at 157.596 kb on - strand, within GFF165at 157.597 kb on + strand, within GFF165at 157.598 kb on - strand, within GFF165at 157.648 kb on - strand, within GFF165at 157.648 kb on - strand, within GFF165at 157.854 kb on - strand, within GFF165

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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155,186 + +0.6
155,187 - -0.1
155,226 - -0.2
155,262 + -0.0
155,262 + -0.6
155,311 + +0.1
155,386 + -0.2
155,486 - GFF163 0.16 +0.0
155,547 - GFF163 0.24 +0.2
155,581 + GFF163 0.28 -0.7
155,643 - GFF163 0.36 +0.0
155,643 - GFF163 0.36 +0.5
155,722 - GFF163 0.46 +0.5
155,730 - GFF163 0.46 -0.0
155,745 + GFF163 0.48 +0.2
155,850 - GFF163 0.61 +0.1
155,871 + GFF163 0.64 +0.3
155,872 - GFF163 0.64 +0.1
155,872 - GFF163 0.64 +0.1
155,874 - GFF163 0.64 -1.7
155,943 - GFF163 0.73 -0.4
155,957 + GFF163 0.74 -0.3
155,984 - GFF163 0.78 -0.1
156,004 + GFF163 0.80 +0.5
156,005 - GFF163 0.80 -0.2
156,121 + -0.2
156,322 + GFF164 0.18 -1.2
156,323 - GFF164 0.19 -0.8
156,402 + GFF164 0.29 -0.5
156,402 + GFF164 0.29 -0.3
156,421 - GFF164 0.32 +0.6
156,491 + GFF164 0.41 +1.3
156,494 + GFF164 0.42 -1.2
156,497 + GFF164 0.42 +0.1
156,648 + GFF164 0.63 +0.7
156,693 - GFF164 0.69 +0.2
156,845 + GFF164 0.89 -0.0
156,845 + GFF164 0.89 -0.3
156,846 - GFF164 0.89 -0.7
156,846 - GFF164 0.89 -0.8
156,922 - -0.4
156,922 - +0.4
156,935 + +1.1
156,941 - -0.1
157,001 - -0.7
157,028 - -0.0
157,033 + GFF165 0.10 -0.1
157,033 + GFF165 0.10 -0.1
157,034 - GFF165 0.10 +0.5
157,034 - GFF165 0.10 -1.0
157,069 + GFF165 0.13 -0.1
157,498 + GFF165 0.53 +0.3
157,515 + GFF165 0.54 -0.7
157,516 - GFF165 0.54 +0.2
157,595 + GFF165 0.62 +0.3
157,595 + GFF165 0.62 +0.3
157,595 + GFF165 0.62 -0.4
157,595 + GFF165 0.62 +0.1
157,595 + GFF165 0.62 -0.1
157,595 + GFF165 0.62 -0.2
157,596 - GFF165 0.62 -0.5
157,596 - GFF165 0.62 +0.1
157,596 - GFF165 0.62 +0.1
157,596 - GFF165 0.62 -0.9
157,597 + GFF165 0.62 +0.0
157,598 - GFF165 0.62 -0.0
157,648 - GFF165 0.66 -0.3
157,648 - GFF165 0.66 -0.5
157,854 - GFF165 0.85 +0.2

Or see this region's nucleotide sequence