Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1634
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
19,472 | - | GFF1633 | 0.40 | +0.1 | |
20,323 | - | +0.3 | |||
20,339 | - | +0.5 | |||
20,369 | + | -0.4 | |||
20,498 | + | -3.3 | |||
20,625 | + | GFF1634 | 0.22 | -2.9 | |
20,634 | - | GFF1634 | 0.23 | -4.8 | |
20,634 | - | GFF1634 | 0.23 | -2.6 | |
20,708 | + | GFF1634 | 0.30 | -3.1 | |
20,709 | - | GFF1634 | 0.30 | -3.2 | |
20,769 | - | GFF1634 | 0.37 | -2.4 | |
20,874 | - | GFF1634 | 0.47 | -1.9 | |
20,899 | - | GFF1634 | 0.50 | -4.1 | |
21,357 | - | -2.8 | |||
21,425 | - | +0.3 | |||
21,429 | + | +0.2 | |||
21,547 | + | -0.1 | |||
21,630 | + | -0.4 | |||
21,631 | - | +0.4 | |||
21,745 | + | GFF1635 | 0.18 | +0.3 | |
21,757 | + | GFF1635 | 0.19 | +0.6 | |
21,970 | - | GFF1635 | 0.36 | +0.1 | |
22,006 | + | GFF1635 | 0.38 | +0.1 | |
22,040 | - | GFF1635 | 0.41 | -0.3 | |
22,040 | - | GFF1635 | 0.41 | -0.0 | |
22,040 | - | GFF1635 | 0.41 | -0.5 | |
22,242 | - | GFF1635 | 0.56 | +0.4 | |
22,242 | - | GFF1635 | 0.56 | +0.4 | |
22,254 | - | GFF1635 | 0.57 | -0.7 | |
22,331 | - | GFF1635 | 0.63 | -0.1 |
Or see this region's nucleotide sequence