Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1546

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1545 and GFF1546 are separated by 80 nucleotidesGFF1546 and GFF1547 are separated by 109 nucleotides GFF1545 - Glycosyltransferase IroB, at 4,559 to 5,674 GFF1545 GFF1546 - ABC transporter protein IroC, at 5,755 to 9,408 GFF1546 GFF1547 - Trilactone hydrolase IroD, at 9,518 to 10,762 GFF1547 Position (kb) 5 6 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1at 4.778 kb on - strand, within GFF1545at 4.916 kb on - strand, within GFF1545at 4.919 kb on + strand, within GFF1545at 5.118 kb on - strand, within GFF1545at 5.128 kb on + strand, within GFF1545at 5.164 kb on + strand, within GFF1545at 5.165 kb on - strand, within GFF1545at 5.265 kb on + strand, within GFF1545at 5.313 kb on + strand, within GFF1545at 5.826 kb on + strandat 5.826 kb on + strandat 5.827 kb on - strandat 5.972 kb on + strandat 6.048 kb on + strandat 6.159 kb on - strand, within GFF1546at 6.159 kb on - strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.205 kb on + strand, within GFF1546at 6.208 kb on + strand, within GFF1546at 6.208 kb on + strand, within GFF1546at 6.233 kb on + strand, within GFF1546at 6.369 kb on + strand, within GFF1546at 6.369 kb on + strand, within GFF1546at 6.651 kb on - strand, within GFF1546at 6.744 kb on + strand, within GFF1546at 6.744 kb on + strand, within GFF1546at 6.978 kb on + strand, within GFF1546at 7.315 kb on - strand, within GFF1546at 7.533 kb on + strand, within GFF1546at 7.533 kb on + strand, within GFF1546at 7.533 kb on + strand, within GFF1546at 7.533 kb on + strand, within GFF1546at 7.643 kb on + strand, within GFF1546at 7.874 kb on - strand, within GFF1546at 7.874 kb on - strand, within GFF1546at 7.923 kb on + strand, within GFF1546at 7.924 kb on - strand, within GFF1546at 7.955 kb on + strand, within GFF1546at 7.955 kb on + strand, within GFF1546at 7.955 kb on + strand, within GFF1546at 8.001 kb on + strand, within GFF1546at 8.142 kb on - strand, within GFF1546at 8.156 kb on + strand, within GFF1546at 8.180 kb on - strand, within GFF1546at 8.180 kb on - strand, within GFF1546at 8.273 kb on + strand, within GFF1546at 8.578 kb on - strand, within GFF1546at 8.909 kb on + strand, within GFF1546at 9.343 kb on + strandat 9.402 kb on - strandat 9.402 kb on - strandat 9.476 kb on + strandat 9.510 kb on + strandat 9.775 kb on + strand, within GFF1547at 9.776 kb on - strand, within GFF1547at 9.803 kb on - strand, within GFF1547at 9.850 kb on + strand, within GFF1547at 9.961 kb on - strand, within GFF1547at 10.106 kb on + strand, within GFF1547at 10.255 kb on + strand, within GFF1547at 10.255 kb on + strand, within GFF1547

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
4,778 - GFF1545 0.20 -0.4
4,916 - GFF1545 0.32 +0.6
4,919 + GFF1545 0.32 +0.5
5,118 - GFF1545 0.50 +0.2
5,128 + GFF1545 0.51 -0.1
5,164 + GFF1545 0.54 -1.5
5,165 - GFF1545 0.54 +0.0
5,265 + GFF1545 0.63 +0.5
5,313 + GFF1545 0.68 -1.9
5,826 + -0.3
5,826 + +0.5
5,827 - +0.5
5,972 + +0.3
6,048 + -0.7
6,159 - GFF1546 0.11 -0.3
6,159 - GFF1546 0.11 -0.4
6,205 + GFF1546 0.12 +0.3
6,205 + GFF1546 0.12 -0.7
6,205 + GFF1546 0.12 -1.4
6,205 + GFF1546 0.12 -0.3
6,205 + GFF1546 0.12 -0.7
6,205 + GFF1546 0.12 +0.5
6,205 + GFF1546 0.12 +0.3
6,208 + GFF1546 0.12 -0.0
6,208 + GFF1546 0.12 -0.7
6,233 + GFF1546 0.13 -0.1
6,369 + GFF1546 0.17 -0.6
6,369 + GFF1546 0.17 +0.2
6,651 - GFF1546 0.25 -0.0
6,744 + GFF1546 0.27 +0.1
6,744 + GFF1546 0.27 -0.2
6,978 + GFF1546 0.33 +1.0
7,315 - GFF1546 0.43 +0.0
7,533 + GFF1546 0.49 +0.1
7,533 + GFF1546 0.49 +0.5
7,533 + GFF1546 0.49 -0.0
7,533 + GFF1546 0.49 +0.2
7,643 + GFF1546 0.52 -1.2
7,874 - GFF1546 0.58 -0.2
7,874 - GFF1546 0.58 +0.4
7,923 + GFF1546 0.59 -0.6
7,924 - GFF1546 0.59 -0.6
7,955 + GFF1546 0.60 -0.3
7,955 + GFF1546 0.60 +0.7
7,955 + GFF1546 0.60 +0.2
8,001 + GFF1546 0.61 -0.9
8,142 - GFF1546 0.65 -0.1
8,156 + GFF1546 0.66 -2.3
8,180 - GFF1546 0.66 -0.2
8,180 - GFF1546 0.66 +0.1
8,273 + GFF1546 0.69 -0.4
8,578 - GFF1546 0.77 -0.1
8,909 + GFF1546 0.86 -1.4
9,343 + +0.3
9,402 - -0.3
9,402 - -0.2
9,476 + -0.0
9,510 + +0.1
9,775 + GFF1547 0.21 +0.3
9,776 - GFF1547 0.21 -0.1
9,803 - GFF1547 0.23 -0.1
9,850 + GFF1547 0.27 -0.0
9,961 - GFF1547 0.36 +0.2
10,106 + GFF1547 0.47 +0.6
10,255 + GFF1547 0.59 +0.1
10,255 + GFF1547 0.59 -0.3

Or see this region's nucleotide sequence