Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1498 and GFF1499 are separated by 220 nucleotides GFF1499 and GFF1500 overlap by 1 nucleotides
GFF1498 - Translation initiation factor 2, at 2,270 to 4,948
GFF1498
GFF1499 - Ribosome-binding factor A, at 5,169 to 5,570
GFF1499
GFF1500 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 5,570 to 6,514
GFF1500
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 5.006 kb on + strand at 5.006 kb on + strand at 5.006 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.076 kb on + strand at 5.492 kb on + strand, within GFF1499 at 5.510 kb on + strand, within GFF1499 at 5.510 kb on + strand, within GFF1499 at 5.510 kb on + strand, within GFF1499 at 5.511 kb on - strand, within GFF1499 at 5.772 kb on - strand, within GFF1500 at 5.795 kb on + strand, within GFF1500 at 5.795 kb on + strand, within GFF1500 at 5.961 kb on - strand, within GFF1500 at 5.984 kb on + strand, within GFF1500 at 6.035 kb on + strand, within GFF1500 at 6.104 kb on + strand, within GFF1500 at 6.104 kb on + strand, within GFF1500 at 6.104 kb on + strand, within GFF1500 at 6.104 kb on + strand, within GFF1500 at 6.105 kb on - strand, within GFF1500 at 6.105 kb on - strand, within GFF1500 at 6.113 kb on - strand, within GFF1500 at 6.129 kb on + strand, within GFF1500 at 6.159 kb on + strand, within GFF1500 at 6.159 kb on + strand, within GFF1500 at 6.160 kb on - strand, within GFF1500 at 6.164 kb on + strand, within GFF1500 at 6.289 kb on - strand, within GFF1500 at 6.332 kb on - strand, within GFF1500 at 6.332 kb on - strand, within GFF1500 at 6.354 kb on + strand, within GFF1500 at 6.357 kb on - strand, within GFF1500 at 6.382 kb on + strand, within GFF1500 at 6.495 kb on + strand at 6.498 kb on + strand at 6.498 kb on + strand at 6.499 kb on - strand at 6.512 kb on + strand at 6.512 kb on + strand at 6.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,006 + -0.2 5,006 + -0.7 5,006 + -0.5 5,014 + -1.2 5,014 + -1.4 5,014 + +0.7 5,014 + -0.7 5,014 + -0.9 5,076 + -0.0 5,492 + GFF1499 0.80 -2.5 5,510 + GFF1499 0.85 -0.7 5,510 + GFF1499 0.85 -0.9 5,510 + GFF1499 0.85 -0.6 5,511 - GFF1499 0.85 -1.7 5,772 - GFF1500 0.21 -1.0 5,795 + GFF1500 0.24 -0.5 5,795 + GFF1500 0.24 -0.3 5,961 - GFF1500 0.41 +0.4 5,984 + GFF1500 0.44 -0.2 6,035 + GFF1500 0.49 +0.4 6,104 + GFF1500 0.57 -0.1 6,104 + GFF1500 0.57 -0.3 6,104 + GFF1500 0.57 +0.8 6,104 + GFF1500 0.57 +0.3 6,105 - GFF1500 0.57 -1.2 6,105 - GFF1500 0.57 -0.0 6,113 - GFF1500 0.57 -0.1 6,129 + GFF1500 0.59 -0.2 6,159 + GFF1500 0.62 -1.5 6,159 + GFF1500 0.62 +0.9 6,160 - GFF1500 0.62 +0.5 6,164 + GFF1500 0.63 -0.8 6,289 - GFF1500 0.76 -0.4 6,332 - GFF1500 0.81 -0.5 6,332 - GFF1500 0.81 +0.1 6,354 + GFF1500 0.83 -0.6 6,357 - GFF1500 0.83 -0.3 6,382 + GFF1500 0.86 -0.5 6,495 + +1.0 6,498 + -0.2 6,498 + -0.1 6,499 - +0.0 6,512 + -0.8 6,512 + +0.5 6,513 - -0.4
Or see this region's nucleotide sequence