Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1451

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1450 and GFF1451 overlap by 4 nucleotidesGFF1451 and GFF1452 are separated by 245 nucleotides GFF1450 - Acetate permease ActP (cation/acetate symporter), at 111,639 to 113,288 GFF1450 GFF1451 - Putative membrane protein, clustering with ActP, at 113,285 to 113,599 GFF1451 GFF1452 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 113,845 to 115,803 GFF1452 Position (kb) 113 114Strain fitness (log2 ratio) -1 0 1 2at 112.350 kb on - strand, within GFF1450at 112.364 kb on - strand, within GFF1450at 112.705 kb on + strand, within GFF1450at 112.705 kb on + strand, within GFF1450at 112.706 kb on - strand, within GFF1450at 112.706 kb on - strand, within GFF1450at 112.706 kb on - strand, within GFF1450at 112.706 kb on - strand, within GFF1450at 112.747 kb on + strand, within GFF1450at 112.748 kb on - strand, within GFF1450at 112.807 kb on + strand, within GFF1450at 112.822 kb on - strand, within GFF1450at 112.822 kb on - strand, within GFF1450at 112.873 kb on + strand, within GFF1450at 112.874 kb on - strand, within GFF1450at 112.895 kb on + strand, within GFF1450at 112.897 kb on + strand, within GFF1450at 112.972 kb on + strand, within GFF1450at 112.998 kb on - strand, within GFF1450at 113.039 kb on + strand, within GFF1450at 113.040 kb on - strand, within GFF1450at 113.041 kb on + strand, within GFF1450at 113.041 kb on + strand, within GFF1450at 113.042 kb on - strand, within GFF1450at 113.082 kb on - strand, within GFF1450at 113.099 kb on - strand, within GFF1450at 113.099 kb on - strand, within GFF1450at 113.355 kb on + strand, within GFF1451at 113.355 kb on + strand, within GFF1451at 113.491 kb on - strand, within GFF1451at 113.574 kb on - strandat 113.677 kb on - strandat 113.690 kb on + strandat 113.840 kb on + strandat 113.840 kb on + strandat 113.840 kb on + strandat 113.841 kb on - strandat 113.973 kb on + strandat 114.051 kb on + strand, within GFF1452at 114.051 kb on + strand, within GFF1452at 114.052 kb on - strand, within GFF1452at 114.056 kb on - strand, within GFF1452at 114.119 kb on + strand, within GFF1452at 114.119 kb on + strand, within GFF1452at 114.157 kb on - strand, within GFF1452at 114.245 kb on - strand, within GFF1452at 114.317 kb on + strand, within GFF1452at 114.322 kb on - strand, within GFF1452at 114.328 kb on - strand, within GFF1452at 114.334 kb on - strand, within GFF1452at 114.541 kb on - strand, within GFF1452

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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112,350 - GFF1450 0.43 +0.7
112,364 - GFF1450 0.44 +0.1
112,705 + GFF1450 0.65 -0.0
112,705 + GFF1450 0.65 +0.0
112,706 - GFF1450 0.65 -0.6
112,706 - GFF1450 0.65 -0.3
112,706 - GFF1450 0.65 -0.2
112,706 - GFF1450 0.65 +0.0
112,747 + GFF1450 0.67 +0.2
112,748 - GFF1450 0.67 +0.0
112,807 + GFF1450 0.71 -0.7
112,822 - GFF1450 0.72 +0.2
112,822 - GFF1450 0.72 +0.3
112,873 + GFF1450 0.75 -0.4
112,874 - GFF1450 0.75 +0.5
112,895 + GFF1450 0.76 +0.1
112,897 + GFF1450 0.76 -0.2
112,972 + GFF1450 0.81 +0.3
112,998 - GFF1450 0.82 +0.1
113,039 + GFF1450 0.85 +0.2
113,040 - GFF1450 0.85 +0.0
113,041 + GFF1450 0.85 -0.3
113,041 + GFF1450 0.85 +0.1
113,042 - GFF1450 0.85 +0.2
113,082 - GFF1450 0.87 -0.1
113,099 - GFF1450 0.88 -0.2
113,099 - GFF1450 0.88 -0.1
113,355 + GFF1451 0.22 -0.7
113,355 + GFF1451 0.22 +0.5
113,491 - GFF1451 0.65 -1.1
113,574 - +0.1
113,677 - +0.1
113,690 + +0.0
113,840 + +0.1
113,840 + -0.3
113,840 + -0.1
113,841 - +0.5
113,973 + -0.5
114,051 + GFF1452 0.11 +0.4
114,051 + GFF1452 0.11 +2.0
114,052 - GFF1452 0.11 +0.1
114,056 - GFF1452 0.11 +0.1
114,119 + GFF1452 0.14 +0.2
114,119 + GFF1452 0.14 -0.3
114,157 - GFF1452 0.16 -0.2
114,245 - GFF1452 0.20 +0.1
114,317 + GFF1452 0.24 -1.5
114,322 - GFF1452 0.24 -0.2
114,328 - GFF1452 0.25 +0.2
114,334 - GFF1452 0.25 -0.0
114,541 - GFF1452 0.36 +1.3

Or see this region's nucleotide sequence