Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1446 and GFF1447 are separated by 94 nucleotides GFF1447 and GFF1448 are separated by 103 nucleotides GFF1448 and GFF1449 overlap by 8 nucleotides
GFF1446 - Putative Na(+)/H(+) exchanger protein, CPA1 family precursor, at 107,776 to 109,422
GFF1446
GFF1447 - LysR family regulatory protein CidR, at 109,517 to 110,404
GFF1447
GFF1448 - Holin-like protein CidA, at 110,508 to 110,918
GFF1448
GFF1449 - CidA-associated membrane protein CidB, at 110,911 to 111,600
GFF1449
Position (kb) 109
110
111 Strain fitness (log2 ratio) -1
0
1 at 108.628 kb on - strand, within GFF1446 at 108.746 kb on - strand, within GFF1446 at 108.746 kb on - strand, within GFF1446 at 108.915 kb on + strand, within GFF1446 at 108.915 kb on + strand, within GFF1446 at 108.916 kb on - strand, within GFF1446 at 108.924 kb on - strand, within GFF1446 at 109.194 kb on - strand, within GFF1446 at 109.403 kb on + strand at 109.404 kb on - strand at 109.506 kb on + strand at 109.582 kb on - strand at 109.766 kb on + strand, within GFF1447 at 109.767 kb on - strand, within GFF1447 at 109.767 kb on - strand, within GFF1447 at 109.784 kb on + strand, within GFF1447 at 109.785 kb on - strand, within GFF1447 at 109.785 kb on - strand, within GFF1447 at 109.825 kb on - strand, within GFF1447 at 109.828 kb on + strand, within GFF1447 at 109.829 kb on - strand, within GFF1447 at 109.829 kb on - strand, within GFF1447 at 109.829 kb on - strand, within GFF1447 at 109.829 kb on - strand, within GFF1447 at 110.013 kb on - strand, within GFF1447 at 110.152 kb on + strand, within GFF1447 at 110.240 kb on + strand, within GFF1447 at 110.241 kb on - strand, within GFF1447 at 110.264 kb on + strand, within GFF1447 at 110.270 kb on - strand, within GFF1447 at 110.275 kb on + strand, within GFF1447 at 110.276 kb on - strand, within GFF1447 at 110.276 kb on - strand, within GFF1447 at 110.330 kb on + strand at 110.382 kb on + strand at 110.438 kb on + strand at 110.470 kb on - strand at 110.470 kb on - strand at 110.531 kb on + strand at 110.591 kb on - strand, within GFF1448 at 110.663 kb on + strand, within GFF1448 at 110.663 kb on + strand, within GFF1448 at 110.664 kb on - strand, within GFF1448 at 110.699 kb on + strand, within GFF1448 at 110.782 kb on - strand, within GFF1448 at 110.842 kb on + strand, within GFF1448 at 110.842 kb on + strand, within GFF1448 at 110.849 kb on - strand, within GFF1448 at 110.890 kb on - strand at 110.890 kb on - strand at 110.934 kb on - strand at 110.984 kb on - strand, within GFF1449 at 111.017 kb on + strand, within GFF1449 at 111.064 kb on - strand, within GFF1449 at 111.064 kb on - strand, within GFF1449 at 111.064 kb on - strand, within GFF1449 at 111.079 kb on + strand, within GFF1449 at 111.291 kb on - strand, within GFF1449
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 108,628 - GFF1446 0.52 -0.3 108,746 - GFF1446 0.59 +0.4 108,746 - GFF1446 0.59 -0.9 108,915 + GFF1446 0.69 -0.8 108,915 + GFF1446 0.69 +0.1 108,916 - GFF1446 0.69 -0.1 108,924 - GFF1446 0.70 -1.7 109,194 - GFF1446 0.86 -0.7 109,403 + +0.3 109,404 - +1.2 109,506 + -0.4 109,582 - +0.4 109,766 + GFF1447 0.28 +0.5 109,767 - GFF1447 0.28 +0.4 109,767 - GFF1447 0.28 -0.4 109,784 + GFF1447 0.30 -0.0 109,785 - GFF1447 0.30 +0.2 109,785 - GFF1447 0.30 +0.6 109,825 - GFF1447 0.35 -0.2 109,828 + GFF1447 0.35 +1.2 109,829 - GFF1447 0.35 +0.3 109,829 - GFF1447 0.35 +0.6 109,829 - GFF1447 0.35 +0.1 109,829 - GFF1447 0.35 +0.7 110,013 - GFF1447 0.56 -0.3 110,152 + GFF1447 0.72 +0.1 110,240 + GFF1447 0.81 -0.4 110,241 - GFF1447 0.82 -0.1 110,264 + GFF1447 0.84 -0.4 110,270 - GFF1447 0.85 +0.2 110,275 + GFF1447 0.85 +0.0 110,276 - GFF1447 0.85 +0.4 110,276 - GFF1447 0.85 +0.3 110,330 + +0.0 110,382 + +0.3 110,438 + -0.5 110,470 - +0.3 110,470 - +0.1 110,531 + +0.1 110,591 - GFF1448 0.20 +0.1 110,663 + GFF1448 0.38 +0.7 110,663 + GFF1448 0.38 -1.7 110,664 - GFF1448 0.38 -0.3 110,699 + GFF1448 0.46 -0.1 110,782 - GFF1448 0.67 +0.2 110,842 + GFF1448 0.81 -0.1 110,842 + GFF1448 0.81 -0.8 110,849 - GFF1448 0.83 -0.2 110,890 - +0.1 110,890 - -0.0 110,934 - -0.2 110,984 - GFF1449 0.11 -0.3 111,017 + GFF1449 0.15 +0.3 111,064 - GFF1449 0.22 +0.0 111,064 - GFF1449 0.22 -1.2 111,064 - GFF1449 0.22 -0.4 111,079 + GFF1449 0.24 +1.0 111,291 - GFF1449 0.55 -0.1
Or see this region's nucleotide sequence