Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1408

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
53,958	+		GFF1407	0.25	+0.1
53,977	+		GFF1407	0.27	-0.3
53,978	-		GFF1407	0.27	+0.7
54,217	-		GFF1407	0.53	+0.3
54,246	+		GFF1407	0.56	-0.2
54,246	+		GFF1407	0.56	+0.0
54,271	+		GFF1407	0.59	-0.7
54,289	-		GFF1407	0.61	+0.3
54,516	+		GFF1407	0.86	+0.8
54,650	+				+0.2
54,651	-				+0.0
54,755	+				+0.5
54,793	+				+0.3
54,804	+				+0.7
54,845	+				-0.1
54,869	-				-1.8
55,028	+		GFF1408	0.40	+0.0
55,048	+		GFF1408	0.44	-0.5
55,056	-		GFF1408	0.46	-0.5
55,065	-		GFF1408	0.47	-3.5
55,184	+		GFF1408	0.71	+0.2
55,184	+		GFF1408	0.71	-0.7
55,185	-		GFF1408	0.71	-1.5
55,185	-		GFF1408	0.71	-0.9
55,185	-		GFF1408	0.71	-2.6
55,185	-		GFF1408	0.71	-1.3
55,188	+		GFF1408	0.72	-0.4
55,189	-		GFF1408	0.72	-1.1
55,189	-		GFF1408	0.72	-1.1
55,322	-				-0.6
56,198	+				+0.2
56,263	+				-0.5