Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1405

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1404 and GFF1405 are separated by 361 nucleotidesGFF1405 and GFF1406 are separated by 88 nucleotides GFF1404 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 49,459 to 50,649 GFF1404 GFF1405 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 51,011 to 52,120 GFF1405 GFF1406 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 52,209 to 53,567 GFF1406 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.045 kb on + strand, within GFF1404at 50.155 kb on + strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.472 kb on + strand, within GFF1404at 50.473 kb on - strand, within GFF1404at 50.640 kb on + strandat 50.641 kb on - strandat 50.710 kb on - strandat 50.758 kb on + strandat 50.776 kb on + strandat 50.787 kb on - strandat 51.021 kb on + strandat 51.074 kb on - strandat 51.133 kb on + strand, within GFF1405at 51.151 kb on + strand, within GFF1405at 51.208 kb on + strand, within GFF1405at 51.250 kb on - strand, within GFF1405at 51.260 kb on + strand, within GFF1405at 51.261 kb on - strand, within GFF1405at 51.337 kb on - strand, within GFF1405at 51.397 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.551 kb on - strand, within GFF1405at 51.674 kb on + strand, within GFF1405at 51.675 kb on - strand, within GFF1405at 51.844 kb on + strand, within GFF1405at 51.844 kb on + strand, within GFF1405at 51.845 kb on - strand, within GFF1405at 51.853 kb on - strand, within GFF1405at 51.933 kb on + strand, within GFF1405at 51.989 kb on + strand, within GFF1405at 51.989 kb on + strand, within GFF1405at 52.162 kb on + strandat 52.205 kb on + strandat 52.374 kb on - strand, within GFF1406at 52.374 kb on - strand, within GFF1406at 52.449 kb on - strand, within GFF1406at 52.459 kb on - strand, within GFF1406at 52.480 kb on - strand, within GFF1406at 52.602 kb on + strand, within GFF1406at 52.618 kb on + strand, within GFF1406at 52.619 kb on - strand, within GFF1406at 52.740 kb on + strand, within GFF1406at 52.760 kb on + strand, within GFF1406at 52.764 kb on + strand, within GFF1406at 52.804 kb on + strand, within GFF1406at 52.889 kb on + strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.984 kb on - strand, within GFF1406at 53.013 kb on - strand, within GFF1406at 53.117 kb on + strand, within GFF1406at 53.118 kb on - strand, within GFF1406

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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50,045 + GFF1404 0.49 -2.0
50,155 + GFF1404 0.58 +0.2
50,282 - GFF1404 0.69 -0.7
50,282 - GFF1404 0.69 -1.0
50,472 + GFF1404 0.85 +0.8
50,473 - GFF1404 0.85 -0.1
50,640 + -0.5
50,641 - +1.2
50,710 - -0.1
50,758 + -0.6
50,776 + +0.3
50,787 - +0.2
51,021 + +0.5
51,074 - -0.1
51,133 + GFF1405 0.11 -0.0
51,151 + GFF1405 0.13 +0.1
51,208 + GFF1405 0.18 -0.3
51,250 - GFF1405 0.22 -0.1
51,260 + GFF1405 0.22 -0.4
51,261 - GFF1405 0.23 +0.6
51,337 - GFF1405 0.29 +0.1
51,397 + GFF1405 0.35 +0.4
51,550 + GFF1405 0.49 -1.2
51,550 + GFF1405 0.49 -0.5
51,551 - GFF1405 0.49 +0.4
51,674 + GFF1405 0.60 +0.3
51,675 - GFF1405 0.60 +0.3
51,844 + GFF1405 0.75 +0.1
51,844 + GFF1405 0.75 -0.2
51,845 - GFF1405 0.75 -0.5
51,853 - GFF1405 0.76 +0.8
51,933 + GFF1405 0.83 -0.1
51,989 + GFF1405 0.88 +0.3
51,989 + GFF1405 0.88 -0.8
52,162 + +0.1
52,205 + -0.1
52,374 - GFF1406 0.12 -0.0
52,374 - GFF1406 0.12 +0.1
52,449 - GFF1406 0.18 +0.0
52,459 - GFF1406 0.18 -0.1
52,480 - GFF1406 0.20 +0.3
52,602 + GFF1406 0.29 -0.1
52,618 + GFF1406 0.30 -0.2
52,619 - GFF1406 0.30 -0.4
52,740 + GFF1406 0.39 +0.2
52,760 + GFF1406 0.41 -0.2
52,764 + GFF1406 0.41 -0.2
52,804 + GFF1406 0.44 -0.5
52,889 + GFF1406 0.50 -0.2
52,890 - GFF1406 0.50 -0.5
52,890 - GFF1406 0.50 +0.6
52,890 - GFF1406 0.50 +0.0
52,890 - GFF1406 0.50 -0.7
52,890 - GFF1406 0.50 -0.1
52,983 + GFF1406 0.57 +0.3
52,983 + GFF1406 0.57 -0.0
52,984 - GFF1406 0.57 -0.9
53,013 - GFF1406 0.59 -0.3
53,117 + GFF1406 0.67 +1.4
53,118 - GFF1406 0.67 -0.0

Or see this region's nucleotide sequence