Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1404

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1403 and GFF1404 are separated by 131 nucleotidesGFF1404 and GFF1405 are separated by 361 nucleotides GFF1403 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 47,783 to 49,327 GFF1403 GFF1404 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 49,459 to 50,649 GFF1404 GFF1405 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 51,011 to 52,120 GFF1405 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.557 kb on - strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.564 kb on + strand, within GFF1403at 48.565 kb on - strand, within GFF1403at 48.646 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.955 kb on - strand, within GFF1403at 49.047 kb on + strand, within GFF1403at 49.051 kb on + strand, within GFF1403at 49.055 kb on - strand, within GFF1403at 49.140 kb on + strand, within GFF1403at 49.141 kb on - strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.165 kb on - strand, within GFF1403at 49.220 kb on + strandat 49.220 kb on + strandat 49.221 kb on - strandat 49.224 kb on + strandat 49.229 kb on + strandat 49.230 kb on - strandat 49.230 kb on - strandat 49.236 kb on - strandat 49.242 kb on + strandat 49.272 kb on - strandat 49.282 kb on + strandat 49.282 kb on + strandat 49.460 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.550 kb on + strandat 49.755 kb on + strand, within GFF1404at 49.847 kb on + strand, within GFF1404at 50.045 kb on + strand, within GFF1404at 50.155 kb on + strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.472 kb on + strand, within GFF1404at 50.473 kb on - strand, within GFF1404at 50.640 kb on + strandat 50.641 kb on - strandat 50.710 kb on - strandat 50.758 kb on + strandat 50.776 kb on + strandat 50.787 kb on - strandat 51.021 kb on + strandat 51.074 kb on - strandat 51.133 kb on + strand, within GFF1405at 51.151 kb on + strand, within GFF1405at 51.208 kb on + strand, within GFF1405at 51.250 kb on - strand, within GFF1405at 51.260 kb on + strand, within GFF1405at 51.261 kb on - strand, within GFF1405at 51.337 kb on - strand, within GFF1405at 51.397 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.551 kb on - strand, within GFF1405

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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48,557 - GFF1403 0.50 -0.3
48,562 + GFF1403 0.50 -0.1
48,562 + GFF1403 0.50 -0.3
48,563 - GFF1403 0.50 +0.1
48,563 - GFF1403 0.50 -0.3
48,563 - GFF1403 0.50 +0.2
48,564 + GFF1403 0.51 -0.3
48,565 - GFF1403 0.51 -0.0
48,646 - GFF1403 0.56 -0.0
48,746 - GFF1403 0.62 +1.1
48,746 - GFF1403 0.62 +0.5
48,955 - GFF1403 0.76 +0.5
49,047 + GFF1403 0.82 +0.4
49,051 + GFF1403 0.82 +0.1
49,055 - GFF1403 0.82 +0.2
49,140 + GFF1403 0.88 -0.1
49,141 - GFF1403 0.88 -0.2
49,162 + GFF1403 0.89 -0.4
49,162 + GFF1403 0.89 +0.3
49,165 - GFF1403 0.89 +0.4
49,220 + -0.4
49,220 + +0.1
49,221 - +1.0
49,224 + -0.0
49,229 + -0.5
49,230 - +0.6
49,230 - +0.1
49,236 - -0.0
49,242 + -0.5
49,272 - +0.3
49,282 + +0.3
49,282 + +0.2
49,460 + +0.1
49,464 + -1.2
49,464 + -0.6
49,550 + -0.2
49,755 + GFF1404 0.25 +0.2
49,847 + GFF1404 0.33 -0.9
50,045 + GFF1404 0.49 -2.0
50,155 + GFF1404 0.58 +0.2
50,282 - GFF1404 0.69 -0.7
50,282 - GFF1404 0.69 -1.0
50,472 + GFF1404 0.85 +0.8
50,473 - GFF1404 0.85 -0.1
50,640 + -0.5
50,641 - +1.2
50,710 - -0.1
50,758 + -0.6
50,776 + +0.3
50,787 - +0.2
51,021 + +0.5
51,074 - -0.1
51,133 + GFF1405 0.11 -0.0
51,151 + GFF1405 0.13 +0.1
51,208 + GFF1405 0.18 -0.3
51,250 - GFF1405 0.22 -0.1
51,260 + GFF1405 0.22 -0.4
51,261 - GFF1405 0.23 +0.6
51,337 - GFF1405 0.29 +0.1
51,397 + GFF1405 0.35 +0.4
51,550 + GFF1405 0.49 -1.2
51,550 + GFF1405 0.49 -0.5
51,551 - GFF1405 0.49 +0.4

Or see this region's nucleotide sequence