Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1397 and GFF1398 are separated by 63 nucleotides GFF1398 and GFF1399 overlap by 4 nucleotides GFF1399 and GFF1400 overlap by 1 nucleotides
GFF1397 - YjbE secreted protein, at 42,382 to 42,627
GFF1397
GFF1398 - YjbF outer membrane lipoprotein, at 42,691 to 43,329
GFF1398
GFF1399 - YjbG polysaccharide synthesis-related protein, at 43,326 to 44,063
GFF1399
GFF1400 - YjbH outer membrane lipoprotein, at 44,063 to 46,159
GFF1400
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.400 kb on + strand at 42.533 kb on + strand, within GFF1397 at 42.533 kb on + strand, within GFF1397 at 42.534 kb on - strand, within GFF1397 at 42.641 kb on - strand at 42.725 kb on + strand at 42.835 kb on + strand, within GFF1398 at 43.005 kb on + strand, within GFF1398 at 43.005 kb on + strand, within GFF1398 at 43.125 kb on + strand, within GFF1398 at 43.185 kb on - strand, within GFF1398 at 43.185 kb on - strand, within GFF1398 at 43.271 kb on - strand at 43.731 kb on + strand, within GFF1399 at 43.732 kb on - strand, within GFF1399 at 43.833 kb on + strand, within GFF1399 at 43.876 kb on - strand, within GFF1399 at 43.934 kb on + strand, within GFF1399 at 43.934 kb on + strand, within GFF1399 at 43.943 kb on + strand, within GFF1399 at 43.944 kb on - strand, within GFF1399 at 44.061 kb on + strand at 44.061 kb on + strand at 44.308 kb on + strand, within GFF1400 at 44.320 kb on + strand, within GFF1400 at 44.366 kb on + strand, within GFF1400 at 44.480 kb on + strand, within GFF1400 at 44.481 kb on - strand, within GFF1400 at 44.483 kb on - strand, within GFF1400 at 44.742 kb on - strand, within GFF1400 at 44.742 kb on - strand, within GFF1400 at 44.852 kb on - strand, within GFF1400 at 44.858 kb on - strand, within GFF1400 at 44.895 kb on + strand, within GFF1400 at 45.048 kb on + strand, within GFF1400 at 45.050 kb on + strand, within GFF1400 at 45.051 kb on - strand, within GFF1400 at 45.051 kb on - strand, within GFF1400 at 45.051 kb on - strand, within GFF1400
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 42,400 + -0.4 42,533 + GFF1397 0.61 +0.5 42,533 + GFF1397 0.61 +0.2 42,534 - GFF1397 0.62 +0.1 42,641 - +0.3 42,725 + +0.3 42,835 + GFF1398 0.23 -0.2 43,005 + GFF1398 0.49 -0.2 43,005 + GFF1398 0.49 +0.5 43,125 + GFF1398 0.68 -0.6 43,185 - GFF1398 0.77 -0.2 43,185 - GFF1398 0.77 -0.1 43,271 - -0.0 43,731 + GFF1399 0.55 -0.5 43,732 - GFF1399 0.55 -0.1 43,833 + GFF1399 0.69 +0.3 43,876 - GFF1399 0.75 -1.2 43,934 + GFF1399 0.82 +0.1 43,934 + GFF1399 0.82 -1.0 43,943 + GFF1399 0.84 -0.2 43,944 - GFF1399 0.84 -0.2 44,061 + -1.1 44,061 + -0.3 44,308 + GFF1400 0.12 +0.1 44,320 + GFF1400 0.12 -0.1 44,366 + GFF1400 0.14 +0.7 44,480 + GFF1400 0.20 -0.1 44,481 - GFF1400 0.20 -0.3 44,483 - GFF1400 0.20 +0.5 44,742 - GFF1400 0.32 +0.2 44,742 - GFF1400 0.32 +0.6 44,852 - GFF1400 0.38 -0.7 44,858 - GFF1400 0.38 +0.3 44,895 + GFF1400 0.40 +0.0 45,048 + GFF1400 0.47 -0.3 45,050 + GFF1400 0.47 +0.3 45,051 - GFF1400 0.47 -0.2 45,051 - GFF1400 0.47 -0.2 45,051 - GFF1400 0.47 -0.6
Or see this region's nucleotide sequence