Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1369 and GFF1370 overlap by 4 nucleotides GFF1370 and GFF1371 are separated by 4 nucleotides GFF1371 and GFF1372 are separated by 2 nucleotides GFF1372 and GFF1373 overlap by 8 nucleotides
GFF1369 - putative cytoplasmic protein, at 19,510 to 19,965
GFF1369
GFF1370 - putative cytoplasmic protein, at 19,962 to 20,567
GFF1370
GFF1371 - putative phage tail fiber protein H, at 20,572 to 22,317
GFF1371
GFF1372 - Putative phage tail protein, at 22,320 to 22,952
GFF1372
GFF1373 - Phage baseplate, at 22,945 to 24,060
GFF1373
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -1
0
1 at 19.580 kb on - strand, within GFF1369 at 19.621 kb on - strand, within GFF1369 at 19.640 kb on + strand, within GFF1369 at 19.673 kb on + strand, within GFF1369 at 19.749 kb on + strand, within GFF1369 at 19.766 kb on - strand, within GFF1369 at 19.766 kb on - strand, within GFF1369 at 19.768 kb on + strand, within GFF1369 at 19.768 kb on + strand, within GFF1369 at 19.769 kb on - strand, within GFF1369 at 19.769 kb on - strand, within GFF1369 at 19.817 kb on + strand, within GFF1369 at 19.860 kb on - strand, within GFF1369 at 19.932 kb on + strand at 19.934 kb on + strand at 19.935 kb on - strand at 19.991 kb on - strand at 20.067 kb on - strand, within GFF1370 at 20.079 kb on - strand, within GFF1370 at 20.217 kb on - strand, within GFF1370 at 20.253 kb on - strand, within GFF1370 at 20.311 kb on - strand, within GFF1370 at 20.549 kb on - strand at 20.567 kb on + strand at 20.633 kb on - strand at 20.633 kb on - strand at 20.634 kb on + strand at 20.635 kb on - strand at 20.635 kb on - strand at 20.739 kb on + strand at 20.763 kb on + strand, within GFF1371 at 20.932 kb on - strand, within GFF1371 at 20.988 kb on + strand, within GFF1371 at 21.075 kb on + strand, within GFF1371 at 21.075 kb on + strand, within GFF1371 at 21.076 kb on - strand, within GFF1371 at 21.076 kb on - strand, within GFF1371 at 21.084 kb on + strand, within GFF1371 at 21.292 kb on - strand, within GFF1371 at 21.364 kb on - strand, within GFF1371 at 21.364 kb on - strand, within GFF1371 at 21.364 kb on - strand, within GFF1371 at 21.463 kb on - strand, within GFF1371 at 21.531 kb on + strand, within GFF1371 at 21.531 kb on + strand, within GFF1371 at 21.532 kb on - strand, within GFF1371 at 21.532 kb on - strand, within GFF1371 at 21.532 kb on - strand, within GFF1371 at 21.630 kb on + strand, within GFF1371 at 21.636 kb on + strand, within GFF1371 at 21.637 kb on - strand, within GFF1371 at 21.637 kb on - strand, within GFF1371 at 21.637 kb on - strand, within GFF1371 at 21.637 kb on - strand, within GFF1371 at 21.694 kb on - strand, within GFF1371 at 21.949 kb on - strand, within GFF1371 at 22.058 kb on + strand, within GFF1371 at 22.059 kb on - strand, within GFF1371 at 22.135 kb on - strand, within GFF1371 at 22.238 kb on - strand at 22.476 kb on - strand, within GFF1372 at 22.660 kb on - strand, within GFF1372 at 22.699 kb on + strand, within GFF1372 at 22.704 kb on - strand, within GFF1372 at 22.728 kb on + strand, within GFF1372 at 22.782 kb on + strand, within GFF1372 at 22.840 kb on + strand, within GFF1372 at 22.841 kb on - strand, within GFF1372 at 23.049 kb on - strand at 23.065 kb on + strand, within GFF1373 at 23.185 kb on - strand, within GFF1373 at 23.236 kb on - strand, within GFF1373
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 19,580 - GFF1369 0.15 -0.8 19,621 - GFF1369 0.24 +0.3 19,640 + GFF1369 0.29 +0.3 19,673 + GFF1369 0.36 +0.1 19,749 + GFF1369 0.52 +0.7 19,766 - GFF1369 0.56 -1.5 19,766 - GFF1369 0.56 +0.4 19,768 + GFF1369 0.57 +0.1 19,768 + GFF1369 0.57 +0.3 19,769 - GFF1369 0.57 +1.1 19,769 - GFF1369 0.57 +0.3 19,817 + GFF1369 0.67 +0.4 19,860 - GFF1369 0.77 +0.0 19,932 + +0.8 19,934 + +0.5 19,935 - +0.5 19,991 - -1.1 20,067 - GFF1370 0.17 -0.3 20,079 - GFF1370 0.19 +0.1 20,217 - GFF1370 0.42 -0.3 20,253 - GFF1370 0.48 -0.4 20,311 - GFF1370 0.58 -1.7 20,549 - -0.1 20,567 + +0.5 20,633 - +0.2 20,633 - +1.4 20,634 + +1.3 20,635 - -0.6 20,635 - -0.4 20,739 + -0.0 20,763 + GFF1371 0.11 +0.2 20,932 - GFF1371 0.21 +0.2 20,988 + GFF1371 0.24 -0.3 21,075 + GFF1371 0.29 -0.6 21,075 + GFF1371 0.29 -0.0 21,076 - GFF1371 0.29 -0.0 21,076 - GFF1371 0.29 +0.3 21,084 + GFF1371 0.29 -0.1 21,292 - GFF1371 0.41 -0.8 21,364 - GFF1371 0.45 -0.0 21,364 - GFF1371 0.45 -0.0 21,364 - GFF1371 0.45 +0.1 21,463 - GFF1371 0.51 -0.4 21,531 + GFF1371 0.55 -0.9 21,531 + GFF1371 0.55 -0.5 21,532 - GFF1371 0.55 +0.2 21,532 - GFF1371 0.55 +0.0 21,532 - GFF1371 0.55 -0.7 21,630 + GFF1371 0.61 -0.4 21,636 + GFF1371 0.61 -0.0 21,637 - GFF1371 0.61 -0.1 21,637 - GFF1371 0.61 -0.2 21,637 - GFF1371 0.61 -0.1 21,637 - GFF1371 0.61 -0.1 21,694 - GFF1371 0.64 -0.5 21,949 - GFF1371 0.79 -0.0 22,058 + GFF1371 0.85 +0.1 22,059 - GFF1371 0.85 -0.5 22,135 - GFF1371 0.90 -0.1 22,238 - +0.0 22,476 - GFF1372 0.25 -0.6 22,660 - GFF1372 0.54 +0.6 22,699 + GFF1372 0.60 -1.1 22,704 - GFF1372 0.61 +0.2 22,728 + GFF1372 0.64 +0.5 22,782 + GFF1372 0.73 -0.1 22,840 + GFF1372 0.82 -1.1 22,841 - GFF1372 0.82 -0.7 23,049 - -0.1 23,065 + GFF1373 0.11 +0.3 23,185 - GFF1373 0.22 +0.2 23,236 - GFF1373 0.26 +0.3
Or see this region's nucleotide sequence