Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1293 and GFF1294 are separated by 9 nucleotides GFF1294 and GFF1295 are separated by 108 nucleotides GFF1295 and GFF1296 are separated by 38 nucleotides
GFF1293 - Phage minor tail protein, at 18,031 to 18,360
GFF1293
GFF1294 - Phage minor tail protein, at 18,370 to 19,068
GFF1294
GFF1295 - Phage tail assembly protein, at 19,177 to 19,812
GFF1295
GFF1296 - Phage tail assembly protein I, at 19,851 to 20,357
GFF1296
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.183 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.261 kb on + strand, within GFF1293 at 18.391 kb on - strand at 18.536 kb on - strand, within GFF1294 at 18.689 kb on + strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.693 kb on - strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.694 kb on + strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.695 kb on - strand, within GFF1294 at 18.807 kb on - strand, within GFF1294 at 18.888 kb on + strand, within GFF1294 at 18.896 kb on + strand, within GFF1294 at 18.919 kb on + strand, within GFF1294 at 18.921 kb on + strand, within GFF1294 at 18.957 kb on + strand, within GFF1294 at 19.054 kb on - strand at 19.089 kb on + strand at 19.166 kb on - strand at 19.182 kb on + strand at 19.204 kb on + strand at 19.409 kb on - strand, within GFF1295 at 19.433 kb on - strand, within GFF1295 at 19.453 kb on + strand, within GFF1295 at 19.454 kb on - strand, within GFF1295 at 19.555 kb on + strand, within GFF1295 at 19.700 kb on - strand, within GFF1295 at 19.700 kb on - strand, within GFF1295 at 19.811 kb on - strand at 19.894 kb on + strand at 19.894 kb on + strand at 19.901 kb on - strand at 19.977 kb on - strand, within GFF1296 at 20.100 kb on - strand, within GFF1296 at 20.103 kb on + strand, within GFF1296 at 20.103 kb on + strand, within GFF1296 at 20.104 kb on - strand, within GFF1296 at 20.104 kb on - strand, within GFF1296 at 20.104 kb on - strand, within GFF1296 at 20.104 kb on - strand, within GFF1296 at 20.106 kb on - strand, within GFF1296 at 20.106 kb on - strand, within GFF1296 at 20.208 kb on + strand, within GFF1296 at 20.416 kb on + strand at 20.618 kb on + strand at 20.619 kb on - strand at 20.620 kb on + strand at 20.693 kb on + strand at 20.704 kb on + strand at 20.760 kb on + strand at 20.761 kb on - strand at 20.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 18,183 + GFF1293 0.46 -0.2 18,261 + GFF1293 0.70 -0.1 18,261 + GFF1293 0.70 +0.8 18,261 + GFF1293 0.70 +0.5 18,391 - +0.3 18,536 - GFF1294 0.24 -0.5 18,689 + GFF1294 0.46 -0.2 18,693 - GFF1294 0.46 -0.2 18,693 - GFF1294 0.46 -0.2 18,693 - GFF1294 0.46 +0.2 18,694 + GFF1294 0.46 +2.3 18,694 + GFF1294 0.46 -1.0 18,694 + GFF1294 0.46 -0.4 18,695 - GFF1294 0.46 -1.9 18,695 - GFF1294 0.46 -1.2 18,695 - GFF1294 0.46 -0.5 18,807 - GFF1294 0.63 -0.3 18,888 + GFF1294 0.74 -0.4 18,896 + GFF1294 0.75 +0.3 18,919 + GFF1294 0.79 -1.1 18,921 + GFF1294 0.79 +1.0 18,957 + GFF1294 0.84 +0.1 19,054 - +0.4 19,089 + +0.8 19,166 - -0.7 19,182 + -1.0 19,204 + +0.0 19,409 - GFF1295 0.36 +0.2 19,433 - GFF1295 0.40 +0.5 19,453 + GFF1295 0.43 +1.2 19,454 - GFF1295 0.44 -1.7 19,555 + GFF1295 0.59 +1.0 19,700 - GFF1295 0.82 +0.7 19,700 - GFF1295 0.82 +0.3 19,811 - +0.0 19,894 + +0.3 19,894 + -0.2 19,901 - -0.4 19,977 - GFF1296 0.25 +0.1 20,100 - GFF1296 0.49 -0.8 20,103 + GFF1296 0.50 -0.5 20,103 + GFF1296 0.50 +1.1 20,104 - GFF1296 0.50 -0.6 20,104 - GFF1296 0.50 +0.7 20,104 - GFF1296 0.50 -0.2 20,104 - GFF1296 0.50 +0.2 20,106 - GFF1296 0.50 -0.1 20,106 - GFF1296 0.50 -0.3 20,208 + GFF1296 0.70 +0.5 20,416 + -0.1 20,618 + -0.1 20,619 - +1.1 20,620 + +0.2 20,693 + +1.5 20,704 + +0.4 20,760 + -0.3 20,761 - +0.6 20,761 - -0.4
Or see this region's nucleotide sequence