Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF126

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF124 and GFF125 are separated by 84 nucleotidesGFF125 and GFF126 overlap by 2 nucleotidesGFF126 and GFF127 overlap by 1 nucleotides GFF124 - Aromatic amino acid transport protein AroP, at 114,340 to 115,710 GFF124 GFF125 - hypothetical protein, at 115,795 to 115,920 GFF125 GFF126 - Possible GPH family transporter (TC 2.A.2) for arabinosides, at 115,919 to 117,280 GFF126 GFF127 - Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), at 117,280 to 118,230 GFF127 Position (kb) 115 116 117 118Strain fitness (log2 ratio) -1 0 1 2at 114.966 kb on + strand, within GFF124at 114.966 kb on + strand, within GFF124at 114.967 kb on - strand, within GFF124at 115.050 kb on + strand, within GFF124at 115.064 kb on - strand, within GFF124at 115.236 kb on + strand, within GFF124at 115.237 kb on - strand, within GFF124at 115.249 kb on + strand, within GFF124at 115.263 kb on + strand, within GFF124at 115.264 kb on - strand, within GFF124at 115.391 kb on - strand, within GFF124at 115.391 kb on - strand, within GFF124at 115.393 kb on - strand, within GFF124at 115.452 kb on + strand, within GFF124at 115.480 kb on - strand, within GFF124at 115.480 kb on - strand, within GFF124at 115.594 kb on - strandat 115.674 kb on + strandat 115.754 kb on - strandat 115.754 kb on - strandat 115.840 kb on - strand, within GFF125at 115.955 kb on - strandat 116.022 kb on + strandat 116.023 kb on - strandat 116.096 kb on - strand, within GFF126at 116.099 kb on + strand, within GFF126at 116.100 kb on - strand, within GFF126at 116.122 kb on - strand, within GFF126at 116.186 kb on + strand, within GFF126at 116.189 kb on - strand, within GFF126at 116.220 kb on - strand, within GFF126at 116.459 kb on - strand, within GFF126at 116.459 kb on - strand, within GFF126at 116.569 kb on - strand, within GFF126at 116.581 kb on - strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.590 kb on - strand, within GFF126at 116.590 kb on - strand, within GFF126at 116.594 kb on - strand, within GFF126at 116.612 kb on - strand, within GFF126at 116.633 kb on + strand, within GFF126at 116.633 kb on + strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.636 kb on + strand, within GFF126at 116.637 kb on - strand, within GFF126at 116.637 kb on - strand, within GFF126at 117.094 kb on + strand, within GFF126at 117.094 kb on + strand, within GFF126at 117.095 kb on - strand, within GFF126at 117.095 kb on - strand, within GFF126at 117.095 kb on - strand, within GFF126at 117.129 kb on - strand, within GFF126at 117.151 kb on - strandat 117.328 kb on - strandat 117.333 kb on - strandat 117.333 kb on - strandat 117.349 kb on + strandat 117.353 kb on - strandat 117.357 kb on + strandat 117.451 kb on - strand, within GFF127at 117.526 kb on + strand, within GFF127at 117.559 kb on - strand, within GFF127at 117.897 kb on + strand, within GFF127at 117.904 kb on + strand, within GFF127at 117.959 kb on + strand, within GFF127at 117.993 kb on + strand, within GFF127at 117.994 kb on - strand, within GFF127at 118.062 kb on + strand, within GFF127at 118.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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114,966 + GFF124 0.46 -0.8
114,966 + GFF124 0.46 -0.0
114,967 - GFF124 0.46 +0.4
115,050 + GFF124 0.52 +0.1
115,064 - GFF124 0.53 +0.2
115,236 + GFF124 0.65 +0.0
115,237 - GFF124 0.65 -1.0
115,249 + GFF124 0.66 -0.2
115,263 + GFF124 0.67 -0.0
115,264 - GFF124 0.67 +0.2
115,391 - GFF124 0.77 -0.3
115,391 - GFF124 0.77 -0.5
115,393 - GFF124 0.77 +0.2
115,452 + GFF124 0.81 -0.0
115,480 - GFF124 0.83 -0.2
115,480 - GFF124 0.83 +0.7
115,594 - -0.2
115,674 + -0.1
115,754 - +0.3
115,754 - -0.2
115,840 - GFF125 0.36 -0.4
115,955 - -0.7
116,022 + +0.1
116,023 - +0.4
116,096 - GFF126 0.13 +0.3
116,099 + GFF126 0.13 +1.1
116,100 - GFF126 0.13 -0.7
116,122 - GFF126 0.15 +0.2
116,186 + GFF126 0.20 +0.1
116,189 - GFF126 0.20 -0.1
116,220 - GFF126 0.22 +0.3
116,459 - GFF126 0.40 -0.0
116,459 - GFF126 0.40 +0.8
116,569 - GFF126 0.48 -0.3
116,581 - GFF126 0.49 -0.8
116,589 + GFF126 0.49 +0.3
116,589 + GFF126 0.49 +0.0
116,589 + GFF126 0.49 +0.3
116,590 - GFF126 0.49 +0.2
116,590 - GFF126 0.49 +0.3
116,594 - GFF126 0.50 +1.8
116,612 - GFF126 0.51 +0.5
116,633 + GFF126 0.52 +0.1
116,633 + GFF126 0.52 +0.5
116,634 - GFF126 0.52 -0.1
116,634 - GFF126 0.52 -0.0
116,634 - GFF126 0.52 +0.2
116,634 - GFF126 0.52 +0.4
116,636 + GFF126 0.53 +0.3
116,637 - GFF126 0.53 -0.1
116,637 - GFF126 0.53 -0.0
117,094 + GFF126 0.86 +0.3
117,094 + GFF126 0.86 -0.5
117,095 - GFF126 0.86 +1.0
117,095 - GFF126 0.86 +0.2
117,095 - GFF126 0.86 -0.4
117,129 - GFF126 0.89 -0.1
117,151 - +0.1
117,328 - +0.1
117,333 - +0.1
117,333 - -0.0
117,349 + +1.4
117,353 - -0.1
117,357 + +0.0
117,451 - GFF127 0.18 -0.5
117,526 + GFF127 0.26 +0.5
117,559 - GFF127 0.29 +0.2
117,897 + GFF127 0.65 -0.3
117,904 + GFF127 0.66 +0.3
117,959 + GFF127 0.71 +0.2
117,993 + GFF127 0.75 +0.9
117,994 - GFF127 0.75 -0.2
118,062 + GFF127 0.82 +0.1
118,228 + +0.7

Or see this region's nucleotide sequence