Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1228 and GFF1229 overlap by 7 nucleotides GFF1229 and GFF1230 are separated by 381 nucleotides GFF1230 and GFF1231 are separated by 23 nucleotides GFF1231 and GFF1232 are separated by 66 nucleotides
GFF1228 - Orf10, at 63,218 to 63,706
GFF1228
GFF1229 - Putative inner membrane protein, at 63,700 to 64,185
GFF1229
GFF1230 - Salmonella enterica serovar Choleraesuis 50k virulence plasmid DNA, complete sequence, at 64,567 to 65,025
GFF1230
GFF1231 - Invasin, at 65,049 to 65,465
GFF1231
GFF1232 - Transposase, at 65,532 to 65,798
GFF1232
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 63.599 kb on + strand, within GFF1228 at 63.600 kb on - strand, within GFF1228 at 63.650 kb on - strand, within GFF1228 at 64.243 kb on - strand at 64.363 kb on - strand at 64.365 kb on - strand at 64.365 kb on - strand at 64.378 kb on + strand at 64.396 kb on + strand at 64.419 kb on + strand at 64.419 kb on + strand at 64.420 kb on - strand at 64.573 kb on + strand at 64.573 kb on + strand at 64.573 kb on + strand at 64.574 kb on - strand at 64.574 kb on - strand at 64.576 kb on - strand at 64.741 kb on - strand, within GFF1230 at 64.978 kb on - strand, within GFF1230 at 64.994 kb on + strand at 65.013 kb on + strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.104 kb on - strand, within GFF1231 at 65.142 kb on + strand, within GFF1231 at 65.143 kb on - strand, within GFF1231 at 65.151 kb on + strand, within GFF1231 at 65.151 kb on + strand, within GFF1231 at 65.568 kb on - strand, within GFF1232 at 65.648 kb on + strand, within GFF1232 at 65.657 kb on - strand, within GFF1232 at 65.657 kb on - strand, within GFF1232 at 65.657 kb on - strand, within GFF1232 at 65.675 kb on - strand, within GFF1232 at 65.720 kb on + strand, within GFF1232 at 65.720 kb on + strand, within GFF1232 at 65.721 kb on - strand, within GFF1232 at 65.761 kb on + strand, within GFF1232 at 65.778 kb on - strand at 65.855 kb on - strand at 65.856 kb on + strand at 65.856 kb on + strand at 65.856 kb on + strand at 65.856 kb on + strand at 65.857 kb on - strand at 65.857 kb on - strand at 65.857 kb on - strand at 65.857 kb on - strand at 65.863 kb on - strand at 65.900 kb on - strand at 65.986 kb on + strand at 65.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 63,599 + GFF1228 0.78 +0.2 63,600 - GFF1228 0.78 -0.2 63,650 - GFF1228 0.88 -0.4 64,243 - +0.9 64,363 - -0.0 64,365 - +0.2 64,365 - -0.9 64,378 + +0.0 64,396 + +0.6 64,419 + +0.3 64,419 + +0.5 64,420 - +0.1 64,573 + -0.7 64,573 + +0.3 64,573 + -0.0 64,574 - +0.5 64,574 - -0.6 64,576 - -0.2 64,741 - GFF1230 0.38 +0.3 64,978 - GFF1230 0.90 +1.3 64,994 + +0.2 65,013 + -0.5 65,014 - +1.5 65,014 - +0.2 65,014 - -1.5 65,014 - +0.2 65,104 - GFF1231 0.13 +0.2 65,142 + GFF1231 0.22 +0.0 65,143 - GFF1231 0.23 +0.4 65,151 + GFF1231 0.24 +0.0 65,151 + GFF1231 0.24 -0.4 65,568 - GFF1232 0.13 -0.1 65,648 + GFF1232 0.43 +0.5 65,657 - GFF1232 0.47 -0.4 65,657 - GFF1232 0.47 -0.4 65,657 - GFF1232 0.47 -0.6 65,675 - GFF1232 0.54 -0.2 65,720 + GFF1232 0.70 +0.0 65,720 + GFF1232 0.70 -0.1 65,721 - GFF1232 0.71 +0.1 65,761 + GFF1232 0.86 +0.2 65,778 - -0.2 65,855 - +0.2 65,856 + +0.1 65,856 + -0.0 65,856 + +0.1 65,856 + +0.6 65,857 - -0.8 65,857 - +0.0 65,857 - -0.1 65,857 - +0.2 65,863 - -0.0 65,900 - +0.5 65,986 + +1.3 65,992 - +0.2
Or see this region's nucleotide sequence