Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1124

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1122 and GFF1123 are separated by 455 nucleotidesGFF1123 and GFF1124 are separated by 252 nucleotidesGFF1124 and GFF1125 are separated by 58 nucleotidesGFF1125 and GFF1126 are separated by 8 nucleotides GFF1122 - Xyloside transporter XynT, at 311,235 to 312,608 GFF1122 GFF1123 - SSU ribosomal protein S20p, at 313,064 to 313,249 GFF1123 GFF1124 - FIG01045144: hypothetical protein, at 313,502 to 313,648 GFF1124 GFF1125 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 313,707 to 314,594 GFF1125 GFF1126 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 314,603 to 317,473 GFF1126 Position (kb) 313 314Strain fitness (log2 ratio) -1 0 1at 312.615 kb on - strandat 313.418 kb on + strandat 313.419 kb on - strandat 313.490 kb on + strandat 313.518 kb on + strand, within GFF1124at 313.614 kb on + strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.622 kb on - strand, within GFF1124at 313.623 kb on + strand, within GFF1124at 313.623 kb on + strand, within GFF1124

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
312,615 - -0.1
313,418 + -0.2
313,419 - -0.3
313,490 + -0.1
313,518 + GFF1124 0.11 +0.0
313,614 + GFF1124 0.76 -0.6
313,622 - GFF1124 0.82 -0.6
313,622 - GFF1124 0.82 +0.0
313,622 - GFF1124 0.82 -0.7
313,623 + GFF1124 0.82 -0.8
313,623 + GFF1124 0.82 -0.1

Or see this region's nucleotide sequence