Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF109

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF107 and GFF108 are separated by 20 nucleotidesGFF108 and GFF109 are separated by 29 nucleotidesGFF109 and GFF110 are separated by 9 nucleotidesGFF110 and GFF111 overlap by 11 nucleotides GFF107 - Spermidine synthase (EC 2.5.1.16), at 93,214 to 94,074 GFF107 GFF108 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A, at 94,095 to 94,889 GFF108 GFF109 - DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism, at 94,919 to 95,686 GFF109 GFF110 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 95,696 to 96,679 GFF110 GFF111 - Candidate type III effector Hop protein, at 96,669 to 97,940 GFF111 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1at 93.961 kb on - strand, within GFF107at 93.961 kb on - strand, within GFF107at 94.046 kb on - strandat 94.049 kb on + strandat 94.050 kb on - strandat 94.151 kb on + strandat 94.155 kb on + strandat 94.156 kb on - strandat 94.197 kb on + strand, within GFF108at 94.198 kb on - strand, within GFF108at 94.206 kb on + strand, within GFF108at 94.207 kb on - strand, within GFF108at 94.209 kb on - strand, within GFF108at 94.221 kb on + strand, within GFF108at 94.425 kb on - strand, within GFF108at 94.433 kb on + strand, within GFF108at 94.445 kb on + strand, within GFF108at 94.445 kb on + strand, within GFF108at 94.446 kb on - strand, within GFF108at 94.446 kb on - strand, within GFF108at 94.446 kb on - strand, within GFF108at 94.478 kb on - strand, within GFF108at 94.545 kb on + strand, within GFF108at 94.623 kb on - strand, within GFF108at 94.650 kb on - strand, within GFF108at 94.650 kb on - strand, within GFF108at 94.656 kb on - strand, within GFF108at 94.667 kb on + strand, within GFF108at 94.709 kb on - strand, within GFF108at 94.751 kb on + strand, within GFF108at 94.773 kb on + strand, within GFF108at 94.773 kb on + strand, within GFF108at 94.774 kb on - strand, within GFF108at 95.055 kb on + strand, within GFF109at 95.055 kb on + strand, within GFF109at 95.059 kb on + strand, within GFF109at 95.059 kb on + strand, within GFF109at 95.179 kb on + strand, within GFF109at 95.649 kb on + strandat 95.896 kb on + strand, within GFF110at 95.962 kb on + strand, within GFF110at 96.104 kb on - strand, within GFF110at 96.144 kb on - strand, within GFF110at 96.144 kb on - strand, within GFF110at 96.149 kb on - strand, within GFF110at 96.215 kb on + strand, within GFF110at 96.384 kb on - strand, within GFF110at 96.683 kb on - strandat 96.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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93,961 - GFF107 0.87 +0.5
93,961 - GFF107 0.87 +0.1
94,046 - +0.2
94,049 + +0.1
94,050 - -0.1
94,151 + +0.1
94,155 + +0.2
94,156 - -0.1
94,197 + GFF108 0.13 -0.0
94,198 - GFF108 0.13 -0.3
94,206 + GFF108 0.14 -1.2
94,207 - GFF108 0.14 -0.1
94,209 - GFF108 0.14 +0.1
94,221 + GFF108 0.16 +0.3
94,425 - GFF108 0.42 -0.0
94,433 + GFF108 0.43 +1.2
94,445 + GFF108 0.44 -0.4
94,445 + GFF108 0.44 +0.2
94,446 - GFF108 0.44 -0.2
94,446 - GFF108 0.44 +0.0
94,446 - GFF108 0.44 +0.2
94,478 - GFF108 0.48 -0.4
94,545 + GFF108 0.57 -0.2
94,623 - GFF108 0.66 +0.2
94,650 - GFF108 0.70 +1.1
94,650 - GFF108 0.70 +0.1
94,656 - GFF108 0.71 +0.1
94,667 + GFF108 0.72 +0.0
94,709 - GFF108 0.77 +0.4
94,751 + GFF108 0.83 +0.2
94,773 + GFF108 0.85 +0.0
94,773 + GFF108 0.85 +0.2
94,774 - GFF108 0.85 -0.8
95,055 + GFF109 0.18 -1.7
95,055 + GFF109 0.18 +0.5
95,059 + GFF109 0.18 -2.1
95,059 + GFF109 0.18 -1.6
95,179 + GFF109 0.34 +0.6
95,649 + +0.7
95,896 + GFF110 0.20 -1.2
95,962 + GFF110 0.27 -2.7
96,104 - GFF110 0.41 +0.1
96,144 - GFF110 0.46 -2.3
96,144 - GFF110 0.46 -0.5
96,149 - GFF110 0.46 +0.5
96,215 + GFF110 0.53 -1.8
96,384 - GFF110 0.70 -1.4
96,683 - -2.5
96,683 - -0.7

Or see this region's nucleotide sequence