Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1073

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1071 and GFF1072 are separated by 153 nucleotidesGFF1072 and GFF1073 are separated by 70 nucleotidesGFF1073 and GFF1074 are separated by 338 nucleotides GFF1071 - type 1 fimbriae anchoring protein FimD, at 252,864 to 255,293 GFF1071 GFF1072 - Putative fimbrial chaperone protein, at 255,447 to 256,130 GFF1072 GFF1073 - putative fimbrial protein, at 256,201 to 256,746 GFF1073 GFF1074 - putative inner membrane protein, at 257,085 to 257,756 GFF1074 Position (kb) 256 257Strain fitness (log2 ratio) -2 -1 0 1at 255.347 kb on + strandat 255.405 kb on - strandat 255.625 kb on + strand, within GFF1072at 255.629 kb on - strand, within GFF1072at 255.731 kb on - strand, within GFF1072at 255.794 kb on + strand, within GFF1072at 255.810 kb on - strand, within GFF1072at 255.812 kb on + strand, within GFF1072at 255.828 kb on - strand, within GFF1072at 256.158 kb on + strandat 256.221 kb on - strandat 256.236 kb on + strandat 256.286 kb on + strand, within GFF1073at 256.289 kb on + strand, within GFF1073at 256.289 kb on + strand, within GFF1073at 256.293 kb on + strand, within GFF1073at 256.294 kb on - strand, within GFF1073at 256.436 kb on + strand, within GFF1073at 256.493 kb on - strand, within GFF1073at 256.586 kb on + strand, within GFF1073at 257.284 kb on - strand, within GFF1074at 257.294 kb on - strand, within GFF1074

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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255,347 + +0.3
255,405 - +0.2
255,625 + GFF1072 0.26 +0.2
255,629 - GFF1072 0.27 -0.2
255,731 - GFF1072 0.42 +0.0
255,794 + GFF1072 0.51 -0.3
255,810 - GFF1072 0.53 -0.2
255,812 + GFF1072 0.53 -0.1
255,828 - GFF1072 0.56 -0.8
256,158 + +0.2
256,221 - -0.2
256,236 + -1.8
256,286 + GFF1073 0.16 +0.0
256,289 + GFF1073 0.16 +0.0
256,289 + GFF1073 0.16 -0.8
256,293 + GFF1073 0.17 -0.4
256,294 - GFF1073 0.17 +0.2
256,436 + GFF1073 0.43 -0.2
256,493 - GFF1073 0.53 +0.1
256,586 + GFF1073 0.71 -1.1
257,284 - GFF1074 0.30 -0.2
257,294 - GFF1074 0.31 +0.1

Or see this region's nucleotide sequence