Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF99 and GFF100 are separated by 116 nucleotides GFF100 and GFF101 overlap by 4 nucleotides
GFF99 - Putative fimbriae, at 84,020 to 85,099
GFF99
GFF100 - ABC-type multidrug transport system, permease component, at 85,216 to 85,986
GFF100
GFF101 - ABC-type multidrug transport system, ATPase component, at 85,983 to 86,909
GFF101
Position (kb) 85
86 Strain fitness (log2 ratio) -1
0
1 at 84.225 kb on - strand, within GFF99 at 84.268 kb on + strand, within GFF99 at 84.272 kb on + strand, within GFF99 at 84.419 kb on + strand, within GFF99 at 84.420 kb on - strand, within GFF99 at 84.420 kb on - strand, within GFF99 at 84.421 kb on + strand, within GFF99 at 84.449 kb on - strand, within GFF99 at 84.530 kb on + strand, within GFF99 at 84.531 kb on - strand, within GFF99 at 84.531 kb on - strand, within GFF99 at 84.533 kb on - strand, within GFF99 at 84.536 kb on - strand, within GFF99 at 84.550 kb on - strand, within GFF99 at 84.581 kb on - strand, within GFF99 at 84.591 kb on - strand, within GFF99 at 84.622 kb on + strand, within GFF99 at 84.622 kb on + strand, within GFF99 at 84.623 kb on - strand, within GFF99 at 84.625 kb on + strand, within GFF99 at 84.626 kb on - strand, within GFF99 at 84.814 kb on + strand, within GFF99 at 84.815 kb on - strand, within GFF99 at 84.941 kb on - strand, within GFF99 at 84.941 kb on - strand, within GFF99 at 85.061 kb on + strand at 85.266 kb on - strand at 85.362 kb on - strand, within GFF100 at 85.422 kb on - strand, within GFF100 at 85.568 kb on - strand, within GFF100 at 85.627 kb on + strand, within GFF100 at 85.767 kb on + strand, within GFF100 at 85.768 kb on - strand, within GFF100 at 85.771 kb on - strand, within GFF100 at 85.771 kb on - strand, within GFF100 at 85.804 kb on - strand, within GFF100 at 85.814 kb on + strand, within GFF100 at 85.814 kb on + strand, within GFF100 at 85.815 kb on - strand, within GFF100 at 86.048 kb on + strand at 86.051 kb on + strand at 86.052 kb on - strand at 86.057 kb on + strand at 86.057 kb on + strand at 86.147 kb on + strand, within GFF101 at 86.147 kb on + strand, within GFF101 at 86.161 kb on + strand, within GFF101 at 86.174 kb on + strand, within GFF101 at 86.181 kb on - strand, within GFF101 at 86.203 kb on - strand, within GFF101 at 86.289 kb on - strand, within GFF101 at 86.566 kb on - strand, within GFF101 at 86.613 kb on + strand, within GFF101 at 86.760 kb on - strand, within GFF101 at 86.922 kb on - strand at 86.945 kb on + strand at 86.946 kb on - strand at 86.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 84,225 - GFF99 0.19 +0.8 84,268 + GFF99 0.23 -0.0 84,272 + GFF99 0.23 +0.3 84,419 + GFF99 0.37 +0.5 84,420 - GFF99 0.37 +0.0 84,420 - GFF99 0.37 -1.3 84,421 + GFF99 0.37 +0.0 84,449 - GFF99 0.40 -0.8 84,530 + GFF99 0.47 +0.1 84,531 - GFF99 0.47 -0.1 84,531 - GFF99 0.47 +0.1 84,533 - GFF99 0.47 -0.6 84,536 - GFF99 0.48 +0.3 84,550 - GFF99 0.49 -0.0 84,581 - GFF99 0.52 +0.0 84,591 - GFF99 0.53 -1.0 84,622 + GFF99 0.56 -0.4 84,622 + GFF99 0.56 -0.5 84,623 - GFF99 0.56 +0.1 84,625 + GFF99 0.56 +0.1 84,626 - GFF99 0.56 +1.2 84,814 + GFF99 0.74 -0.5 84,815 - GFF99 0.74 -0.4 84,941 - GFF99 0.85 +0.0 84,941 - GFF99 0.85 +0.1 85,061 + +0.2 85,266 - +0.2 85,362 - GFF100 0.19 +0.5 85,422 - GFF100 0.27 +0.2 85,568 - GFF100 0.46 -0.0 85,627 + GFF100 0.53 -1.0 85,767 + GFF100 0.71 -0.6 85,768 - GFF100 0.72 -0.0 85,771 - GFF100 0.72 +0.1 85,771 - GFF100 0.72 +0.1 85,804 - GFF100 0.76 -0.3 85,814 + GFF100 0.78 +0.0 85,814 + GFF100 0.78 -0.1 85,815 - GFF100 0.78 +0.5 86,048 + +0.0 86,051 + -0.5 86,052 - -1.2 86,057 + +0.2 86,057 + -0.3 86,147 + GFF101 0.18 +0.1 86,147 + GFF101 0.18 -0.1 86,161 + GFF101 0.19 -1.0 86,174 + GFF101 0.21 -0.1 86,181 - GFF101 0.21 +0.1 86,203 - GFF101 0.24 +0.2 86,289 - GFF101 0.33 -0.1 86,566 - GFF101 0.63 -1.3 86,613 + GFF101 0.68 +0.0 86,760 - GFF101 0.84 +0.6 86,922 - +0.1 86,945 + +0.1 86,946 - +0.6 86,946 - -0.5
Or see this region's nucleotide sequence