Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF787
Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-1 |
|---|---|---|---|---|---|
| remove | |||||
| 135,697 | - | -0.4 | |||
| 135,795 | - | +0.5 | |||
| 135,806 | - | +0.4 | |||
| 136,148 | - | -0.5 | |||
| 136,149 | - | +0.4 | |||
| 136,253 | - | +0.2 | |||
| 136,255 | - | +0.0 | |||
| 136,462 | - | -0.1 | |||
| 136,467 | - | +0.4 | |||
| 136,471 | - | +0.7 | |||
| 136,484 | - | +0.2 | |||
| 136,619 | - | GFF787 | 0.22 | -0.6 | |
| 136,683 | + | GFF787 | 0.40 | -0.8 | |
| 136,705 | - | GFF787 | 0.46 | -1.5 | |
| 136,860 | + | GFF787 | 0.88 | -1.7 | |
| 136,914 | - | +0.2 | |||
| 137,093 | - | +0.3 | |||
| 137,105 | + | +0.2 | |||
| 137,105 | + | +0.5 | |||
| 137,106 | - | +1.1 | |||
| 137,206 | - | GFF788 | 0.12 | +0.3 | |
| 137,240 | + | GFF788 | 0.14 | +0.4 | |
| 137,449 | - | GFF788 | 0.26 | +0.0 | |
| 137,464 | + | GFF788 | 0.27 | -1.2 | |
| 137,492 | + | GFF788 | 0.29 | +0.4 | |
| 137,492 | + | GFF788 | 0.29 | +0.0 | |
| 137,493 | - | GFF788 | 0.29 | -0.5 | |
| 137,493 | - | GFF788 | 0.29 | +0.4 | |
| 137,510 | - | GFF788 | 0.30 | +0.4 | |
| 137,559 | - | GFF788 | 0.33 | +0.8 | |
| 137,671 | + | GFF788 | 0.40 | -0.2 | |
| 137,725 | + | GFF788 | 0.43 | +0.4 | |
| 137,794 | + | GFF788 | 0.48 | +0.3 |
Or see this region's nucleotide sequence