Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF785

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF781 and GFF782 overlap by 1 nucleotidesGFF782 and GFF783 overlap by 20 nucleotidesGFF783 and GFF784 are separated by 187 nucleotidesGFF784 and GFF785 are separated by 47 nucleotides GFF781 - Phage protein, at 133,137 to 133,373 GFF781 GFF782 - hypothetical protein, at 133,373 to 133,732 GFF782 GFF783 - Phage protein, at 133,713 to 133,922 GFF783 GFF784 - Phage protein, at 134,110 to 134,244 GFF784 GFF785 - hypothetical protein, at 134,292 to 134,486 GFF785 Position (kb) 134 135Strain fitness (log2 ratio) -1 0 1at 133.862 kb on + strand, within GFF783at 134.373 kb on + strand, within GFF785at 134.428 kb on - strand, within GFF785at 134.633 kb on - strandat 134.652 kb on + strandat 134.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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133,862 + GFF783 0.71 -0.9
134,373 + GFF785 0.42 -0.6
134,428 - GFF785 0.70 -1.0
134,633 - -0.7
134,652 + +0.5
134,827 - +0.2

Or see this region's nucleotide sequence