Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF694 and GFF695 overlap by 1 nucleotides GFF695 and GFF696 are separated by 229 nucleotides GFF696 and GFF697 are separated by 207 nucleotides
GFF694 - Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG, at 50,751 to 51,746
GFF694
GFF695 - Transcriptional regulator YbiH, TetR family, at 51,746 to 52,420
GFF695
GFF696 - ATP-dependent RNA helicase RhlE, at 52,650 to 54,014
GFF696
GFF697 - ATP-dependent helicase DinG/Rad3, at 54,222 to 56,366
GFF697
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -1
0
1 at 51.673 kb on + strand at 51.781 kb on + strand at 51.781 kb on + strand at 51.782 kb on - strand at 51.782 kb on - strand at 51.916 kb on + strand, within GFF695 at 51.935 kb on - strand, within GFF695 at 52.099 kb on + strand, within GFF695 at 52.248 kb on - strand, within GFF695 at 52.277 kb on - strand, within GFF695 at 52.415 kb on - strand at 52.645 kb on + strand at 52.649 kb on + strand at 52.649 kb on + strand at 52.650 kb on - strand at 52.682 kb on + strand at 52.721 kb on + strand at 52.722 kb on - strand at 52.947 kb on - strand, within GFF696 at 53.130 kb on - strand, within GFF696 at 53.523 kb on - strand, within GFF696 at 53.558 kb on + strand, within GFF696 at 53.607 kb on + strand, within GFF696 at 53.608 kb on - strand, within GFF696 at 53.634 kb on + strand, within GFF696 at 53.635 kb on - strand, within GFF696 at 53.635 kb on - strand, within GFF696 at 53.635 kb on - strand, within GFF696 at 53.635 kb on - strand, within GFF696 at 53.638 kb on + strand, within GFF696 at 53.711 kb on + strand, within GFF696 at 53.763 kb on - strand, within GFF696 at 53.906 kb on + strand at 54.074 kb on + strand at 54.074 kb on + strand at 54.075 kb on - strand at 54.075 kb on - strand at 54.151 kb on + strand at 54.266 kb on + strand at 54.296 kb on + strand at 54.411 kb on + strand at 54.573 kb on + strand, within GFF697 at 54.573 kb on + strand, within GFF697 at 54.574 kb on - strand, within GFF697 at 54.786 kb on - strand, within GFF697 at 54.823 kb on - strand, within GFF697 at 54.959 kb on - strand, within GFF697
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 51,673 + -0.1 51,781 + -0.5 51,781 + +0.1 51,782 - -0.2 51,782 - -0.7 51,916 + GFF695 0.25 -0.1 51,935 - GFF695 0.28 +0.0 52,099 + GFF695 0.52 +0.6 52,248 - GFF695 0.74 +0.2 52,277 - GFF695 0.79 +0.9 52,415 - -0.1 52,645 + -0.2 52,649 + -0.4 52,649 + +0.6 52,650 - +0.5 52,682 + -0.4 52,721 + +0.4 52,722 - -0.1 52,947 - GFF696 0.22 +0.2 53,130 - GFF696 0.35 +0.5 53,523 - GFF696 0.64 -0.5 53,558 + GFF696 0.67 +0.5 53,607 + GFF696 0.70 +0.4 53,608 - GFF696 0.70 +0.4 53,634 + GFF696 0.72 +0.1 53,635 - GFF696 0.72 +0.2 53,635 - GFF696 0.72 +0.3 53,635 - GFF696 0.72 +0.3 53,635 - GFF696 0.72 +1.1 53,638 + GFF696 0.72 +0.3 53,711 + GFF696 0.78 -0.0 53,763 - GFF696 0.82 +0.1 53,906 + -0.1 54,074 + +0.2 54,074 + -0.2 54,075 - -0.5 54,075 - +0.2 54,151 + -0.4 54,266 + -0.0 54,296 + +0.6 54,411 + -0.2 54,573 + GFF697 0.16 -0.1 54,573 + GFF697 0.16 +0.1 54,574 - GFF697 0.16 -0.2 54,786 - GFF697 0.26 +0.1 54,823 - GFF697 0.28 +0.3 54,959 - GFF697 0.34 -0.2
Or see this region's nucleotide sequence