Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF53

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF52 and GFF53 are separated by 257 nucleotidesGFF53 and GFF54 are separated by 450 nucleotides GFF52 - Translation elongation factor Ts, at 32,958 to 33,809 GFF52 GFF53 - SSU ribosomal protein S2p (SAe), at 34,067 to 34,792 GFF53 GFF54 - Methionine aminopeptidase (EC 3.4.11.18), at 35,243 to 36,037 GFF54 Position (kb) 34 35Strain fitness (log2 ratio) -1 0 1at 34.056 kb on - strandat 34.056 kb on - strandat 34.056 kb on - strandat 34.996 kb on + strandat 34.997 kb on - strandat 35.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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34,056 - -0.2
34,056 - -0.6
34,056 - -1.0
34,996 + -0.6
34,997 - +0.1
35,168 + +0.0

Or see this region's nucleotide sequence