Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF486 and GFF487 are separated by 32 nucleotides GFF487 and GFF488 are separated by 110 nucleotides GFF488 and GFF489 are separated by 0 nucleotides GFF489 and GFF490 overlap by 4 nucleotides
GFF486 - FIG005274: hypothetical protein, at 206,843 to 208,402
GFF486
GFF487 - hypothetical protein, at 208,435 to 208,548
GFF487
GFF488 - FIG004405: Putative cytoplasmic protein, at 208,659 to 208,862
GFF488
GFF489 - Cellulose synthase, putative, at 208,863 to 209,615
GFF489
GFF490 - Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12), at 209,612 to 212,236
GFF490
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1 at 208.049 kb on + strand, within GFF486 at 208.166 kb on - strand, within GFF486 at 208.203 kb on - strand, within GFF486 at 208.949 kb on - strand, within GFF489 at 209.080 kb on + strand, within GFF489 at 209.085 kb on + strand, within GFF489 at 209.086 kb on - strand, within GFF489 at 209.087 kb on + strand, within GFF489 at 209.087 kb on + strand, within GFF489 at 209.088 kb on - strand, within GFF489 at 209.216 kb on + strand, within GFF489 at 209.216 kb on + strand, within GFF489 at 209.217 kb on - strand, within GFF489 at 209.288 kb on + strand, within GFF489 at 209.398 kb on + strand, within GFF489 at 209.514 kb on + strand, within GFF489 at 209.807 kb on + strand at 209.815 kb on + strand at 209.958 kb on - strand, within GFF490 at 210.041 kb on - strand, within GFF490 at 210.124 kb on + strand, within GFF490 at 210.188 kb on - strand, within GFF490 at 210.188 kb on - strand, within GFF490 at 210.248 kb on + strand, within GFF490 at 210.250 kb on + strand, within GFF490 at 210.266 kb on - strand, within GFF490 at 210.455 kb on + strand, within GFF490 at 210.455 kb on + strand, within GFF490 at 210.491 kb on + strand, within GFF490 at 210.492 kb on - strand, within GFF490 at 210.492 kb on - strand, within GFF490 at 210.533 kb on - strand, within GFF490 at 210.599 kb on + strand, within GFF490 at 210.600 kb on - strand, within GFF490
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 208,049 + GFF486 0.77 +0.0 208,166 - GFF486 0.85 -0.2 208,203 - GFF486 0.87 +1.3 208,949 - GFF489 0.11 +0.2 209,080 + GFF489 0.29 -2.0 209,085 + GFF489 0.29 +0.4 209,086 - GFF489 0.30 +0.6 209,087 + GFF489 0.30 +0.2 209,087 + GFF489 0.30 +0.9 209,088 - GFF489 0.30 +0.4 209,216 + GFF489 0.47 +0.6 209,216 + GFF489 0.47 +0.5 209,217 - GFF489 0.47 +0.0 209,288 + GFF489 0.56 +0.2 209,398 + GFF489 0.71 -0.5 209,514 + GFF489 0.86 +0.1 209,807 + -0.2 209,815 + +0.2 209,958 - GFF490 0.13 +0.2 210,041 - GFF490 0.16 +0.3 210,124 + GFF490 0.20 +0.3 210,188 - GFF490 0.22 +0.1 210,188 - GFF490 0.22 +0.2 210,248 + GFF490 0.24 +0.4 210,250 + GFF490 0.24 +0.9 210,266 - GFF490 0.25 +0.7 210,455 + GFF490 0.32 +0.1 210,455 + GFF490 0.32 +0.3 210,491 + GFF490 0.33 -0.1 210,492 - GFF490 0.34 +0.1 210,492 - GFF490 0.34 +0.3 210,533 - GFF490 0.35 -0.6 210,599 + GFF490 0.38 +0.2 210,600 - GFF490 0.38 -0.5
Or see this region's nucleotide sequence