Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4754 and GFF4755 are separated by 3 nucleotides GFF4755 and GFF4756 are separated by 25 nucleotides GFF4756 and GFF4757 overlap by 11 nucleotides GFF4757 and GFF4758 overlap by 1 nucleotides
GFF4754 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 62,373 to 63,164
GFF4754
GFF4755 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 63,168 to 63,428
GFF4755
GFF4756 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 63,454 to 64,128
GFF4756
GFF4757 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components); Surface presentation of antigens protein SpaO, at 64,118 to 65,029
GFF4757
GFF4758 - Type III secretion host injection and negative regulator protein (YopD), at 65,029 to 66,039
GFF4758
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1 at 62.491 kb on - strand, within GFF4754 at 62.596 kb on - strand, within GFF4754 at 62.712 kb on - strand, within GFF4754 at 62.774 kb on + strand, within GFF4754 at 62.801 kb on + strand, within GFF4754 at 62.828 kb on + strand, within GFF4754 at 62.829 kb on - strand, within GFF4754 at 62.831 kb on + strand, within GFF4754 at 62.864 kb on + strand, within GFF4754 at 62.947 kb on - strand, within GFF4754 at 63.230 kb on - strand, within GFF4755 at 63.325 kb on - strand, within GFF4755 at 63.391 kb on + strand, within GFF4755 at 63.401 kb on + strand, within GFF4755 at 63.478 kb on + strand at 63.538 kb on - strand, within GFF4756 at 63.546 kb on + strand, within GFF4756 at 63.547 kb on - strand, within GFF4756 at 63.547 kb on - strand, within GFF4756 at 63.948 kb on + strand, within GFF4756 at 64.509 kb on - strand, within GFF4757 at 64.721 kb on + strand, within GFF4757
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 62,491 - GFF4754 0.15 +0.6 62,596 - GFF4754 0.28 -0.3 62,712 - GFF4754 0.43 +0.4 62,774 + GFF4754 0.51 -0.2 62,801 + GFF4754 0.54 +0.3 62,828 + GFF4754 0.57 +0.0 62,829 - GFF4754 0.58 +0.2 62,831 + GFF4754 0.58 -0.2 62,864 + GFF4754 0.62 +0.0 62,947 - GFF4754 0.72 -0.1 63,230 - GFF4755 0.24 +0.3 63,325 - GFF4755 0.60 +0.8 63,391 + GFF4755 0.85 +0.6 63,401 + GFF4755 0.89 -1.0 63,478 + -0.2 63,538 - GFF4756 0.12 -0.8 63,546 + GFF4756 0.14 -0.5 63,547 - GFF4756 0.14 -0.4 63,547 - GFF4756 0.14 -0.0 63,948 + GFF4756 0.73 -0.3 64,509 - GFF4757 0.43 +0.2 64,721 + GFF4757 0.66 +0.1
Or see this region's nucleotide sequence