Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4703 and GFF4704 are separated by 185 nucleotides GFF4704 and GFF4705 overlap by 4 nucleotides
GFF4703 - Anaerobic nitric oxide reductase transcription regulator NorR, at 13,145 to 14,665
GFF4703
GFF4704 - Anaerobic nitric oxide reductase flavorubredoxin, at 14,851 to 16,290
GFF4704
GFF4705 - Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-), at 16,287 to 17,420
GFF4705
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -1
0
1 at 13.886 kb on + strand, within GFF4703 at 13.886 kb on + strand, within GFF4703 at 13.886 kb on + strand, within GFF4703 at 14.191 kb on + strand, within GFF4703 at 14.192 kb on - strand, within GFF4703 at 14.461 kb on + strand, within GFF4703 at 14.693 kb on + strand at 14.954 kb on - strand at 15.070 kb on + strand, within GFF4704 at 15.071 kb on - strand, within GFF4704 at 15.148 kb on - strand, within GFF4704 at 15.151 kb on + strand, within GFF4704 at 15.177 kb on + strand, within GFF4704 at 15.313 kb on + strand, within GFF4704 at 15.313 kb on + strand, within GFF4704 at 15.314 kb on - strand, within GFF4704 at 15.314 kb on - strand, within GFF4704 at 15.365 kb on - strand, within GFF4704 at 15.433 kb on + strand, within GFF4704 at 15.433 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.575 kb on - strand, within GFF4704 at 15.575 kb on - strand, within GFF4704 at 15.596 kb on - strand, within GFF4704 at 15.609 kb on + strand, within GFF4704 at 15.643 kb on - strand, within GFF4704 at 15.643 kb on - strand, within GFF4704 at 15.643 kb on - strand, within GFF4704 at 15.789 kb on + strand, within GFF4704 at 15.790 kb on - strand, within GFF4704 at 16.095 kb on - strand, within GFF4704 at 16.139 kb on + strand, within GFF4704 at 16.139 kb on + strand, within GFF4704 at 16.139 kb on + strand, within GFF4704 at 16.153 kb on + strand at 16.153 kb on + strand at 16.248 kb on - strand at 16.307 kb on + strand at 16.308 kb on - strand at 16.434 kb on - strand, within GFF4705 at 16.521 kb on - strand, within GFF4705 at 16.572 kb on - strand, within GFF4705 at 16.649 kb on - strand, within GFF4705 at 16.664 kb on + strand, within GFF4705 at 16.754 kb on - strand, within GFF4705 at 16.852 kb on + strand, within GFF4705 at 16.853 kb on - strand, within GFF4705 at 16.949 kb on - strand, within GFF4705 at 16.959 kb on - strand, within GFF4705 at 16.962 kb on - strand, within GFF4705 at 16.996 kb on + strand, within GFF4705 at 17.060 kb on + strand, within GFF4705 at 17.061 kb on - strand, within GFF4705 at 17.064 kb on + strand, within GFF4705 at 17.069 kb on - strand, within GFF4705 at 17.091 kb on + strand, within GFF4705 at 17.209 kb on + strand, within GFF4705
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 13,886 + GFF4703 0.49 +0.9 13,886 + GFF4703 0.49 -0.2 13,886 + GFF4703 0.49 +0.0 14,191 + GFF4703 0.69 -0.2 14,192 - GFF4703 0.69 +0.4 14,461 + GFF4703 0.87 +0.1 14,693 + +0.0 14,954 - -1.1 15,070 + GFF4704 0.15 +0.5 15,071 - GFF4704 0.15 +0.1 15,148 - GFF4704 0.21 +0.1 15,151 + GFF4704 0.21 +0.6 15,177 + GFF4704 0.23 +0.6 15,313 + GFF4704 0.32 -0.8 15,313 + GFF4704 0.32 +0.0 15,314 - GFF4704 0.32 +0.3 15,314 - GFF4704 0.32 -0.7 15,365 - GFF4704 0.36 +0.2 15,433 + GFF4704 0.40 -0.2 15,433 + GFF4704 0.40 -0.1 15,574 + GFF4704 0.50 -0.0 15,574 + GFF4704 0.50 +0.1 15,574 + GFF4704 0.50 +0.2 15,574 + GFF4704 0.50 +0.4 15,575 - GFF4704 0.50 +0.3 15,575 - GFF4704 0.50 -0.5 15,596 - GFF4704 0.52 -0.1 15,609 + GFF4704 0.53 -0.1 15,643 - GFF4704 0.55 +0.2 15,643 - GFF4704 0.55 -0.1 15,643 - GFF4704 0.55 -0.1 15,789 + GFF4704 0.65 +0.7 15,790 - GFF4704 0.65 -0.5 16,095 - GFF4704 0.86 -0.2 16,139 + GFF4704 0.89 +0.8 16,139 + GFF4704 0.89 +1.2 16,139 + GFF4704 0.89 -0.2 16,153 + +0.2 16,153 + +0.6 16,248 - -0.2 16,307 + +0.0 16,308 - -0.1 16,434 - GFF4705 0.13 +1.5 16,521 - GFF4705 0.21 +0.3 16,572 - GFF4705 0.25 -0.9 16,649 - GFF4705 0.32 -0.1 16,664 + GFF4705 0.33 -0.5 16,754 - GFF4705 0.41 -1.0 16,852 + GFF4705 0.50 +0.2 16,853 - GFF4705 0.50 -0.1 16,949 - GFF4705 0.58 +0.4 16,959 - GFF4705 0.59 -0.3 16,962 - GFF4705 0.60 -0.3 16,996 + GFF4705 0.63 +0.2 17,060 + GFF4705 0.68 -0.6 17,061 - GFF4705 0.68 +0.1 17,064 + GFF4705 0.69 -0.8 17,069 - GFF4705 0.69 -0.4 17,091 + GFF4705 0.71 +0.1 17,209 + GFF4705 0.81 +0.2
Or see this region's nucleotide sequence