Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4651 and GFF4652 are separated by 3 nucleotides GFF4652 and GFF4653 are separated by 64 nucleotides GFF4653 and GFF4654 are separated by 120 nucleotides
GFF4651 - MotA/TolQ/ExbB proton channel family protein, at 443,972 to 444,664
GFF4651
GFF4652 - Tol biopolymer transport system, TolR protein, at 444,668 to 445,096
GFF4652
GFF4653 - TolA protein, at 445,161 to 446,519
GFF4653
GFF4654 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 446,640 to 447,935
GFF4654
Position (kb) 445
446
447 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 444.376 kb on + strand, within GFF4651 at 444.376 kb on + strand, within GFF4651 at 444.376 kb on + strand, within GFF4651 at 444.409 kb on - strand, within GFF4651 at 444.662 kb on + strand at 444.703 kb on + strand at 444.719 kb on - strand, within GFF4652 at 444.739 kb on - strand, within GFF4652 at 444.764 kb on - strand, within GFF4652 at 444.841 kb on + strand, within GFF4652 at 444.862 kb on + strand, within GFF4652 at 444.888 kb on - strand, within GFF4652 at 444.951 kb on + strand, within GFF4652 at 445.234 kb on + strand at 445.235 kb on - strand at 445.271 kb on + strand at 445.350 kb on + strand, within GFF4653 at 446.261 kb on + strand, within GFF4653 at 446.351 kb on + strand, within GFF4653 at 446.354 kb on + strand, within GFF4653 at 446.378 kb on - strand, within GFF4653 at 446.518 kb on - strand at 446.540 kb on + strand at 446.557 kb on + strand at 446.639 kb on + strand at 447.026 kb on - strand, within GFF4654 at 447.147 kb on + strand, within GFF4654 at 447.148 kb on - strand, within GFF4654 at 447.211 kb on - strand, within GFF4654 at 447.289 kb on - strand, within GFF4654 at 447.453 kb on + strand, within GFF4654 at 447.454 kb on - strand, within GFF4654
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 444,376 + GFF4651 0.58 -0.7 444,376 + GFF4651 0.58 -2.7 444,376 + GFF4651 0.58 -3.2 444,409 - GFF4651 0.63 -1.5 444,662 + -3.0 444,703 + -3.6 444,719 - GFF4652 0.12 -3.3 444,739 - GFF4652 0.17 -2.3 444,764 - GFF4652 0.22 -3.6 444,841 + GFF4652 0.40 -4.8 444,862 + GFF4652 0.45 -3.0 444,888 - GFF4652 0.51 -4.2 444,951 + GFF4652 0.66 -4.2 445,234 + -2.6 445,235 - -1.9 445,271 + -1.7 445,350 + GFF4653 0.14 -2.0 446,261 + GFF4653 0.81 -3.4 446,351 + GFF4653 0.88 -1.9 446,354 + GFF4653 0.88 -4.8 446,378 - GFF4653 0.90 -2.4 446,518 - -0.4 446,540 + +0.0 446,557 + -0.5 446,639 + -2.0 447,026 - GFF4654 0.30 -4.2 447,147 + GFF4654 0.39 -1.7 447,148 - GFF4654 0.39 -1.5 447,211 - GFF4654 0.44 -2.7 447,289 - GFF4654 0.50 -4.4 447,453 + GFF4654 0.63 -3.9 447,454 - GFF4654 0.63 -2.0
Or see this region's nucleotide sequence