Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4569 and GFF4570 are separated by 116 nucleotides GFF4570 and GFF4571 overlap by 1 nucleotides GFF4571 and GFF4572 overlap by 1 nucleotides
GFF4569 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 355,772 to 356,707
GFF4569
GFF4570 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 356,824 to 357,549
GFF4570
GFF4571 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 357,549 to 358,223
GFF4571
GFF4572 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 358,223 to 358,963
GFF4572
Position (kb) 356
357
358 Strain fitness (log2 ratio) -1
0
1 at 355.872 kb on + strand, within GFF4569 at 355.902 kb on + strand, within GFF4569 at 356.038 kb on + strand, within GFF4569 at 356.129 kb on - strand, within GFF4569 at 356.206 kb on - strand, within GFF4569 at 356.237 kb on - strand, within GFF4569 at 356.285 kb on - strand, within GFF4569 at 356.690 kb on - strand at 356.720 kb on + strand at 356.728 kb on - strand at 356.780 kb on + strand at 356.913 kb on + strand, within GFF4570 at 357.017 kb on - strand, within GFF4570 at 357.074 kb on - strand, within GFF4570 at 357.093 kb on + strand, within GFF4570 at 357.093 kb on + strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.305 kb on - strand, within GFF4570 at 357.461 kb on - strand, within GFF4570 at 357.571 kb on + strand at 357.611 kb on - strand at 357.730 kb on - strand, within GFF4571 at 357.789 kb on - strand, within GFF4571 at 358.049 kb on - strand, within GFF4571 at 358.180 kb on + strand at 358.288 kb on + strand at 358.308 kb on + strand, within GFF4572 at 358.308 kb on + strand, within GFF4572 at 358.309 kb on - strand, within GFF4572 at 358.498 kb on - strand, within GFF4572
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 355,872 + GFF4569 0.11 -1.2 355,902 + GFF4569 0.14 +0.1 356,038 + GFF4569 0.28 -0.3 356,129 - GFF4569 0.38 -0.1 356,206 - GFF4569 0.46 -0.7 356,237 - GFF4569 0.50 -0.2 356,285 - GFF4569 0.55 +0.0 356,690 - +0.1 356,720 + -0.0 356,728 - +0.9 356,780 + -1.6 356,913 + GFF4570 0.12 -0.9 357,017 - GFF4570 0.27 -1.7 357,074 - GFF4570 0.34 +0.4 357,093 + GFF4570 0.37 -0.7 357,093 + GFF4570 0.37 -0.2 357,094 - GFF4570 0.37 -0.3 357,094 - GFF4570 0.37 -0.6 357,094 - GFF4570 0.37 +0.3 357,305 - GFF4570 0.66 -0.1 357,461 - GFF4570 0.88 -0.1 357,571 + -0.0 357,611 - +0.2 357,730 - GFF4571 0.27 -0.0 357,789 - GFF4571 0.36 -0.1 358,049 - GFF4571 0.74 +0.3 358,180 + -0.3 358,288 + +1.1 358,308 + GFF4572 0.11 +0.1 358,308 + GFF4572 0.11 -0.2 358,309 - GFF4572 0.12 +0.2 358,498 - GFF4572 0.37 +0.1
Or see this region's nucleotide sequence