Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4527 and GFF4528 are separated by 9 nucleotides GFF4528 and GFF4529 overlap by 4 nucleotides GFF4529 and GFF4530 overlap by 4 nucleotides
GFF4527 - Citrate lyase alpha chain (EC 4.1.3.6), at 314,043 to 315,572
GFF4527
GFF4528 - Citrate lyase beta chain (EC 4.1.3.6), at 315,582 to 316,490
GFF4528
GFF4529 - Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6), at 316,487 to 316,783
GFF4529
GFF4530 - [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22), at 316,780 to 317,856
GFF4530
Position (kb) 315
316
317 Strain fitness (log2 ratio) -1
0
1 at 314.776 kb on + strand, within GFF4527 at 315.041 kb on - strand, within GFF4527 at 315.117 kb on + strand, within GFF4527 at 315.117 kb on + strand, within GFF4527 at 315.218 kb on - strand, within GFF4527 at 315.806 kb on + strand, within GFF4528 at 315.806 kb on + strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 316.315 kb on - strand, within GFF4528 at 316.395 kb on - strand, within GFF4528 at 316.442 kb on + strand at 316.443 kb on - strand at 316.465 kb on - strand at 316.766 kb on + strand at 317.045 kb on + strand, within GFF4530 at 317.178 kb on + strand, within GFF4530 at 317.186 kb on + strand, within GFF4530 at 317.212 kb on - strand, within GFF4530 at 317.307 kb on + strand, within GFF4530 at 317.308 kb on - strand, within GFF4530 at 317.409 kb on + strand, within GFF4530 at 317.410 kb on - strand, within GFF4530 at 317.410 kb on - strand, within GFF4530 at 317.410 kb on - strand, within GFF4530
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 314,776 + GFF4527 0.48 -1.0 315,041 - GFF4527 0.65 -0.4 315,117 + GFF4527 0.70 -0.2 315,117 + GFF4527 0.70 +0.1 315,218 - GFF4527 0.77 -0.2 315,806 + GFF4528 0.25 +0.7 315,806 + GFF4528 0.25 -0.1 315,807 - GFF4528 0.25 -0.6 315,807 - GFF4528 0.25 -0.1 315,992 - GFF4528 0.45 -1.0 315,992 - GFF4528 0.45 -0.1 316,315 - GFF4528 0.81 -0.2 316,395 - GFF4528 0.89 -0.4 316,442 + +1.3 316,443 - +0.5 316,465 - +0.4 316,766 + +0.3 317,045 + GFF4530 0.25 -0.3 317,178 + GFF4530 0.37 +0.2 317,186 + GFF4530 0.38 -0.7 317,212 - GFF4530 0.40 -0.2 317,307 + GFF4530 0.49 +0.6 317,308 - GFF4530 0.49 -0.3 317,409 + GFF4530 0.58 -0.4 317,410 - GFF4530 0.58 -0.6 317,410 - GFF4530 0.58 +1.5 317,410 - GFF4530 0.58 -1.7
Or see this region's nucleotide sequence