Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4525 and GFF4526 overlap by 26 nucleotides GFF4526 and GFF4527 are separated by 3 nucleotides GFF4527 and GFF4528 are separated by 9 nucleotides GFF4528 and GFF4529 overlap by 4 nucleotides
GFF4525 - '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme- A synthase (EC 2.7.8.25)' transl_table=11, at 312,620 to 313,513
GFF4525
GFF4526 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61), at 313,488 to 314,039
GFF4526
GFF4527 - Citrate lyase alpha chain (EC 4.1.3.6), at 314,043 to 315,572
GFF4527
GFF4528 - Citrate lyase beta chain (EC 4.1.3.6), at 315,582 to 316,490
GFF4528
GFF4529 - Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6), at 316,487 to 316,783
GFF4529
Position (kb) 314
315
316 Strain fitness (log2 ratio) -1
0
1 at 313.118 kb on + strand, within GFF4525 at 313.118 kb on + strand, within GFF4525 at 313.118 kb on + strand, within GFF4525 at 313.119 kb on - strand, within GFF4525 at 313.644 kb on + strand, within GFF4526 at 313.816 kb on + strand, within GFF4526 at 313.911 kb on - strand, within GFF4526 at 314.044 kb on + strand at 314.507 kb on + strand, within GFF4527 at 314.776 kb on + strand, within GFF4527 at 315.041 kb on - strand, within GFF4527 at 315.117 kb on + strand, within GFF4527 at 315.117 kb on + strand, within GFF4527 at 315.218 kb on - strand, within GFF4527 at 315.806 kb on + strand, within GFF4528 at 315.806 kb on + strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 316.315 kb on - strand, within GFF4528 at 316.395 kb on - strand, within GFF4528 at 316.442 kb on + strand at 316.443 kb on - strand at 316.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 313,118 + GFF4525 0.56 -0.2 313,118 + GFF4525 0.56 -0.4 313,118 + GFF4525 0.56 +0.3 313,119 - GFF4525 0.56 +0.4 313,644 + GFF4526 0.28 +0.3 313,816 + GFF4526 0.59 -0.1 313,911 - GFF4526 0.77 -0.9 314,044 + +0.1 314,507 + GFF4527 0.30 +0.0 314,776 + GFF4527 0.48 -1.0 315,041 - GFF4527 0.65 -0.4 315,117 + GFF4527 0.70 -0.2 315,117 + GFF4527 0.70 +0.1 315,218 - GFF4527 0.77 -0.2 315,806 + GFF4528 0.25 +0.7 315,806 + GFF4528 0.25 -0.1 315,807 - GFF4528 0.25 -0.6 315,807 - GFF4528 0.25 -0.1 315,992 - GFF4528 0.45 -1.0 315,992 - GFF4528 0.45 -0.1 316,315 - GFF4528 0.81 -0.2 316,395 - GFF4528 0.89 -0.4 316,442 + +1.3 316,443 - +0.5 316,465 - +0.4
Or see this region's nucleotide sequence