Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4448 and GFF4449 are separated by 114 nucleotides GFF4449 and GFF4450 are separated by 43 nucleotides GFF4450 and GFF4451 are separated by 30 nucleotides
GFF4448 - Fimbriae-like adhesin SfmA, at 234,329 to 234,886
GFF4448
GFF4449 - Fimbriae-like adhesin FimI, at 235,001 to 235,495
GFF4449
GFF4450 - Fimbrial periplasmic chaperone SfmC, at 235,539 to 236,231
GFF4450
GFF4451 - Outer membrane usher protein SfmD, at 236,262 to 238,874
GFF4451
Position (kb) 235
236
237 Strain fitness (log2 ratio) -1
0
1 at 234.541 kb on + strand, within GFF4448 at 234.545 kb on - strand, within GFF4448 at 234.721 kb on + strand, within GFF4448 at 234.722 kb on - strand, within GFF4448 at 234.722 kb on - strand, within GFF4448 at 234.812 kb on + strand, within GFF4448 at 234.868 kb on + strand at 234.947 kb on + strand at 234.956 kb on + strand at 234.956 kb on + strand at 234.956 kb on + strand at 234.956 kb on + strand at 234.956 kb on + strand at 234.957 kb on - strand at 234.957 kb on - strand at 235.127 kb on + strand, within GFF4449 at 235.350 kb on + strand, within GFF4449 at 235.354 kb on + strand, within GFF4449 at 235.355 kb on - strand, within GFF4449 at 235.477 kb on + strand at 235.625 kb on - strand, within GFF4450 at 235.682 kb on + strand, within GFF4450 at 235.685 kb on + strand, within GFF4450 at 235.814 kb on + strand, within GFF4450 at 236.056 kb on - strand, within GFF4450 at 236.058 kb on + strand, within GFF4450 at 236.305 kb on + strand at 236.305 kb on + strand at 236.305 kb on + strand at 236.305 kb on + strand at 236.655 kb on - strand, within GFF4451 at 236.764 kb on - strand, within GFF4451 at 236.884 kb on - strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.093 kb on - strand, within GFF4451 at 237.093 kb on - strand, within GFF4451 at 237.096 kb on + strand, within GFF4451 at 237.097 kb on - strand, within GFF4451 at 237.166 kb on + strand, within GFF4451 at 237.181 kb on - strand, within GFF4451 at 237.185 kb on + strand, within GFF4451 at 237.189 kb on + strand, within GFF4451
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 234,541 + GFF4448 0.38 -0.3 234,545 - GFF4448 0.39 -0.3 234,721 + GFF4448 0.70 +1.1 234,722 - GFF4448 0.70 -0.2 234,722 - GFF4448 0.70 -0.3 234,812 + GFF4448 0.87 -1.7 234,868 + -0.2 234,947 + +0.2 234,956 + +0.1 234,956 + +0.7 234,956 + +0.1 234,956 + +0.1 234,956 + +0.0 234,957 - -0.2 234,957 - -0.6 235,127 + GFF4449 0.25 -0.2 235,350 + GFF4449 0.71 +0.4 235,354 + GFF4449 0.71 +0.3 235,355 - GFF4449 0.72 -1.1 235,477 + +0.1 235,625 - GFF4450 0.12 -0.5 235,682 + GFF4450 0.21 -0.2 235,685 + GFF4450 0.21 -0.6 235,814 + GFF4450 0.40 -0.1 236,056 - GFF4450 0.75 +0.0 236,058 + GFF4450 0.75 -1.3 236,305 + -0.1 236,305 + -0.1 236,305 + +0.1 236,305 + -0.6 236,655 - GFF4451 0.15 +0.2 236,764 - GFF4451 0.19 +0.2 236,884 - GFF4451 0.24 -0.1 237,092 + GFF4451 0.32 +0.0 237,092 + GFF4451 0.32 -0.8 237,092 + GFF4451 0.32 -1.0 237,093 - GFF4451 0.32 -0.1 237,093 - GFF4451 0.32 +0.5 237,096 + GFF4451 0.32 +0.5 237,097 - GFF4451 0.32 -0.5 237,166 + GFF4451 0.35 -0.4 237,181 - GFF4451 0.35 -0.5 237,185 + GFF4451 0.35 +0.1 237,189 + GFF4451 0.35 -0.1
Or see this region's nucleotide sequence