Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4131 and GFF4132 are separated by 129 nucleotides GFF4132 and GFF4133 overlap by 4 nucleotides GFF4133 and GFF4134 are separated by 23 nucleotides
GFF4131 - PTS system, glucose-specific IIC component (EC 2.7.1.69) / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component (EC 2.7.1.69), at 13,769 to 15,310
GFF4131
GFF4132 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 15,440 to 16,282
GFF4132
GFF4133 - 6-phospho-3-hexuloisomerase, at 16,279 to 16,845
GFF4133
GFF4134 - D-arabino-3-hexulose 6-phosphate formaldehyde lyase, at 16,869 to 17,504
GFF4134
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1 at 14.536 kb on + strand, within GFF4131 at 14.689 kb on + strand, within GFF4131 at 14.690 kb on - strand, within GFF4131 at 14.864 kb on - strand, within GFF4131 at 14.870 kb on + strand, within GFF4131 at 14.909 kb on + strand, within GFF4131 at 14.909 kb on + strand, within GFF4131 at 14.909 kb on + strand, within GFF4131 at 14.951 kb on + strand, within GFF4131 at 14.951 kb on + strand, within GFF4131 at 14.951 kb on + strand, within GFF4131 at 15.091 kb on + strand, within GFF4131 at 15.092 kb on - strand, within GFF4131 at 15.092 kb on - strand, within GFF4131 at 15.143 kb on - strand, within GFF4131 at 15.359 kb on + strand at 15.363 kb on + strand at 15.363 kb on + strand at 15.364 kb on - strand at 15.367 kb on + strand at 15.367 kb on + strand at 15.368 kb on - strand at 15.399 kb on + strand at 15.400 kb on - strand at 15.416 kb on - strand at 15.416 kb on - strand at 15.424 kb on + strand at 15.425 kb on - strand at 15.426 kb on + strand at 15.427 kb on - strand at 15.427 kb on - strand at 15.603 kb on - strand, within GFF4132 at 15.662 kb on + strand, within GFF4132 at 15.776 kb on + strand, within GFF4132 at 15.776 kb on + strand, within GFF4132 at 15.783 kb on + strand, within GFF4132 at 15.783 kb on + strand, within GFF4132 at 15.787 kb on + strand, within GFF4132 at 15.788 kb on - strand, within GFF4132 at 15.803 kb on + strand, within GFF4132 at 15.804 kb on - strand, within GFF4132 at 15.804 kb on - strand, within GFF4132 at 15.898 kb on + strand, within GFF4132 at 15.899 kb on - strand, within GFF4132 at 15.983 kb on - strand, within GFF4132 at 15.993 kb on - strand, within GFF4132 at 16.010 kb on + strand, within GFF4132 at 16.144 kb on + strand, within GFF4132 at 16.211 kb on + strand at 16.314 kb on + strand at 16.676 kb on - strand, within GFF4133 at 16.717 kb on - strand, within GFF4133 at 16.802 kb on - strand at 16.843 kb on + strand at 17.107 kb on - strand, within GFF4134 at 17.119 kb on + strand, within GFF4134 at 17.196 kb on - strand, within GFF4134 at 17.255 kb on + strand, within GFF4134 at 17.255 kb on + strand, within GFF4134 at 17.255 kb on + strand, within GFF4134 at 17.267 kb on - strand, within GFF4134
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 14,536 + GFF4131 0.50 -0.1 14,689 + GFF4131 0.60 -1.5 14,690 - GFF4131 0.60 -0.4 14,864 - GFF4131 0.71 +1.4 14,870 + GFF4131 0.71 -0.0 14,909 + GFF4131 0.74 -0.0 14,909 + GFF4131 0.74 -0.5 14,909 + GFF4131 0.74 +0.0 14,951 + GFF4131 0.77 +0.4 14,951 + GFF4131 0.77 +0.2 14,951 + GFF4131 0.77 -0.1 15,091 + GFF4131 0.86 -0.1 15,092 - GFF4131 0.86 -0.3 15,092 - GFF4131 0.86 +0.3 15,143 - GFF4131 0.89 +0.0 15,359 + -0.8 15,363 + -0.3 15,363 + +0.2 15,364 - -0.1 15,367 + -0.2 15,367 + +0.1 15,368 - -0.4 15,399 + +0.0 15,400 - +0.3 15,416 - -0.6 15,416 - +0.0 15,424 + -0.4 15,425 - -0.2 15,426 + -0.3 15,427 - +1.0 15,427 - -0.2 15,603 - GFF4132 0.19 +0.8 15,662 + GFF4132 0.26 +0.1 15,776 + GFF4132 0.40 -0.1 15,776 + GFF4132 0.40 +0.5 15,783 + GFF4132 0.41 -0.2 15,783 + GFF4132 0.41 -0.2 15,787 + GFF4132 0.41 +0.3 15,788 - GFF4132 0.41 -0.2 15,803 + GFF4132 0.43 +0.1 15,804 - GFF4132 0.43 +0.1 15,804 - GFF4132 0.43 -1.1 15,898 + GFF4132 0.54 +1.0 15,899 - GFF4132 0.54 +0.5 15,983 - GFF4132 0.64 +0.3 15,993 - GFF4132 0.66 -0.1 16,010 + GFF4132 0.68 -0.4 16,144 + GFF4132 0.84 +0.1 16,211 + -0.6 16,314 + +0.2 16,676 - GFF4133 0.70 +0.2 16,717 - GFF4133 0.77 +1.1 16,802 - +0.4 16,843 + -0.2 17,107 - GFF4134 0.37 +0.7 17,119 + GFF4134 0.39 +0.0 17,196 - GFF4134 0.51 +0.2 17,255 + GFF4134 0.61 -0.3 17,255 + GFF4134 0.61 -1.1 17,255 + GFF4134 0.61 +0.2 17,267 - GFF4134 0.63 -0.0
Or see this region's nucleotide sequence