Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3966 and GFF3967 overlap by 4 nucleotides GFF3967 and GFF3968 overlap by 4 nucleotides GFF3968 and GFF3969 are separated by 26 nucleotides
GFF3966 - Cobyric acid synthase (EC 6.3.5.10), at 243,651 to 245,171
GFF3966
GFF3967 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 245,168 to 245,713
GFF3967
GFF3968 - Cobalamin synthase (EC 2.7.8.26), at 245,710 to 246,453
GFF3968
GFF3969 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 246,480 to 247,550
GFF3969
Position (kb) 245
246
247 Strain fitness (log2 ratio) -1
0
1 at 244.728 kb on - strand, within GFF3966 at 245.253 kb on - strand, within GFF3967 at 245.253 kb on - strand, within GFF3967 at 245.254 kb on + strand, within GFF3967 at 245.309 kb on - strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.414 kb on - strand, within GFF3967 at 245.559 kb on + strand, within GFF3967 at 245.849 kb on + strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.222 kb on - strand, within GFF3968 at 246.259 kb on - strand, within GFF3968 at 246.303 kb on + strand, within GFF3968 at 246.366 kb on + strand, within GFF3968 at 246.450 kb on - strand at 246.479 kb on + strand at 246.479 kb on + strand at 246.480 kb on - strand at 246.490 kb on + strand at 246.554 kb on + strand at 246.635 kb on + strand, within GFF3969 at 246.853 kb on + strand, within GFF3969 at 246.854 kb on - strand, within GFF3969 at 246.858 kb on - strand, within GFF3969 at 246.860 kb on + strand, within GFF3969 at 246.861 kb on - strand, within GFF3969 at 247.253 kb on - strand, within GFF3969 at 247.402 kb on - strand, within GFF3969 at 247.424 kb on - strand, within GFF3969
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 244,728 - GFF3966 0.71 -0.5 245,253 - GFF3967 0.16 -0.7 245,253 - GFF3967 0.16 -0.2 245,254 + GFF3967 0.16 +0.3 245,309 - GFF3967 0.26 +0.3 245,413 + GFF3967 0.45 -0.2 245,413 + GFF3967 0.45 -0.0 245,414 - GFF3967 0.45 +0.4 245,559 + GFF3967 0.72 -0.0 245,849 + GFF3968 0.19 +0.8 246,182 - GFF3968 0.63 -0.1 246,182 - GFF3968 0.63 +0.0 246,222 - GFF3968 0.69 -1.1 246,259 - GFF3968 0.74 +0.4 246,303 + GFF3968 0.80 +0.9 246,366 + GFF3968 0.88 +0.0 246,450 - -0.1 246,479 + -1.2 246,479 + +0.5 246,480 - +0.1 246,490 + +0.1 246,554 + +0.1 246,635 + GFF3969 0.14 -0.2 246,853 + GFF3969 0.35 +0.7 246,854 - GFF3969 0.35 +0.1 246,858 - GFF3969 0.35 +0.2 246,860 + GFF3969 0.35 +0.3 246,861 - GFF3969 0.36 +0.5 247,253 - GFF3969 0.72 +0.1 247,402 - GFF3969 0.86 -0.0 247,424 - GFF3969 0.88 -0.7
Or see this region's nucleotide sequence