Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3442 and GFF3443 overlap by 7 nucleotides GFF3443 and GFF3444 overlap by 7 nucleotides GFF3444 and GFF3445 are separated by 81 nucleotides
GFF3442 - Nickel transport system permease protein nikC2 (TC 3.A.1.5.3), at 203,773 to 204,585
GFF3442
GFF3443 - Nickel transport ATP-binding protein nikD2 (TC 3.A.1.5.3), at 204,579 to 205,376
GFF3443
GFF3444 - Nickel transport ATP-binding protein nikE2 (TC 3.A.1.5.3), at 205,370 to 205,960
GFF3444
GFF3445 - Putative inner membrane protein, at 206,042 to 207,175
GFF3445
Position (kb) 205
206 Strain fitness (log2 ratio) -1
0
1 at 204.491 kb on + strand, within GFF3442 at 204.503 kb on + strand, within GFF3442 at 204.655 kb on + strand at 204.788 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.849 kb on - strand, within GFF3443 at 204.965 kb on - strand, within GFF3443 at 204.968 kb on - strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.078 kb on - strand, within GFF3443 at 205.080 kb on - strand, within GFF3443 at 205.245 kb on + strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.248 kb on - strand, within GFF3443 at 205.334 kb on - strand at 205.366 kb on + strand at 205.366 kb on + strand at 205.856 kb on + strand, within GFF3444 at 205.856 kb on + strand, within GFF3444 at 205.857 kb on - strand, within GFF3444 at 205.857 kb on - strand, within GFF3444 at 205.857 kb on - strand, within GFF3444 at 205.903 kb on + strand at 205.920 kb on + strand at 206.086 kb on + strand at 206.092 kb on - strand at 206.256 kb on + strand, within GFF3445 at 206.425 kb on + strand, within GFF3445 at 206.428 kb on - strand, within GFF3445 at 206.428 kb on - strand, within GFF3445 at 206.428 kb on - strand, within GFF3445 at 206.538 kb on - strand, within GFF3445 at 206.687 kb on + strand, within GFF3445 at 206.796 kb on + strand, within GFF3445 at 206.822 kb on + strand, within GFF3445 at 206.959 kb on + strand, within GFF3445
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 204,491 + GFF3442 0.88 -0.3 204,503 + GFF3442 0.90 -0.1 204,655 + +0.4 204,788 + GFF3443 0.26 +0.1 204,818 + GFF3443 0.30 +0.1 204,818 + GFF3443 0.30 +0.2 204,819 - GFF3443 0.30 -0.5 204,819 - GFF3443 0.30 -0.2 204,849 - GFF3443 0.34 -0.4 204,965 - GFF3443 0.48 +0.6 204,968 - GFF3443 0.49 +1.2 205,077 + GFF3443 0.62 +0.0 205,077 + GFF3443 0.62 +0.4 205,078 - GFF3443 0.63 -0.2 205,080 - GFF3443 0.63 -0.2 205,245 + GFF3443 0.83 +0.2 205,246 - GFF3443 0.84 -0.1 205,246 - GFF3443 0.84 -0.0 205,248 - GFF3443 0.84 +0.2 205,334 - +0.9 205,366 + +0.3 205,366 + +0.2 205,856 + GFF3444 0.82 +0.2 205,856 + GFF3444 0.82 +0.6 205,857 - GFF3444 0.82 -0.9 205,857 - GFF3444 0.82 +0.2 205,857 - GFF3444 0.82 +0.9 205,903 + -0.3 205,920 + -0.6 206,086 + -0.0 206,092 - +0.0 206,256 + GFF3445 0.19 +0.4 206,425 + GFF3445 0.34 +0.9 206,428 - GFF3445 0.34 -0.2 206,428 - GFF3445 0.34 -0.1 206,428 - GFF3445 0.34 -0.6 206,538 - GFF3445 0.44 -0.3 206,687 + GFF3445 0.57 -0.5 206,796 + GFF3445 0.66 -0.7 206,822 + GFF3445 0.69 +0.3 206,959 + GFF3445 0.81 -1.6
Or see this region's nucleotide sequence