Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3362 and GFF3363 are separated by 64 nucleotides GFF3363 and GFF3364 are separated by 14 nucleotides
GFF3362 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 126,505 to 127,455
GFF3362
GFF3363 - Flagellar hook-associated protein FlgK, at 127,520 to 129,181
GFF3363
GFF3364 - Flagellar hook-associated protein FlgL, at 129,196 to 130,149
GFF3364
Position (kb) 127
128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.520 kb on - strand at 127.220 kb on - strand, within GFF3362 at 127.241 kb on + strand, within GFF3362 at 127.280 kb on - strand, within GFF3362 at 127.454 kb on - strand at 127.555 kb on + strand at 127.579 kb on + strand at 127.579 kb on + strand at 127.580 kb on - strand at 127.621 kb on + strand at 127.636 kb on + strand at 127.684 kb on + strand at 127.707 kb on + strand, within GFF3363 at 127.718 kb on + strand, within GFF3363 at 127.718 kb on + strand, within GFF3363 at 127.718 kb on + strand, within GFF3363 at 127.743 kb on + strand, within GFF3363 at 127.743 kb on + strand, within GFF3363 at 127.941 kb on + strand, within GFF3363 at 128.175 kb on + strand, within GFF3363 at 128.193 kb on - strand, within GFF3363 at 128.193 kb on - strand, within GFF3363 at 128.218 kb on + strand, within GFF3363 at 128.218 kb on + strand, within GFF3363 at 128.298 kb on - strand, within GFF3363 at 128.298 kb on - strand, within GFF3363 at 128.404 kb on + strand, within GFF3363 at 128.405 kb on - strand, within GFF3363 at 128.408 kb on - strand, within GFF3363 at 128.527 kb on + strand, within GFF3363 at 128.527 kb on + strand, within GFF3363 at 128.527 kb on + strand, within GFF3363 at 128.528 kb on - strand, within GFF3363 at 128.536 kb on + strand, within GFF3363 at 128.539 kb on + strand, within GFF3363 at 128.539 kb on + strand, within GFF3363 at 128.606 kb on + strand, within GFF3363 at 128.608 kb on + strand, within GFF3363 at 128.608 kb on + strand, within GFF3363 at 128.919 kb on + strand, within GFF3363 at 128.919 kb on + strand, within GFF3363 at 128.920 kb on - strand, within GFF3363 at 129.028 kb on + strand at 129.028 kb on + strand at 129.040 kb on + strand at 129.113 kb on + strand at 129.133 kb on - strand at 129.220 kb on + strand at 129.347 kb on + strand, within GFF3364 at 129.379 kb on + strand, within GFF3364 at 129.595 kb on + strand, within GFF3364 at 129.676 kb on - strand, within GFF3364 at 130.063 kb on + strand at 130.064 kb on - strand at 130.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 126,520 - +0.4 127,220 - GFF3362 0.75 +0.1 127,241 + GFF3362 0.77 +0.6 127,280 - GFF3362 0.81 +0.5 127,454 - +0.4 127,555 + +0.2 127,579 + -0.0 127,579 + -0.2 127,580 - +0.1 127,621 + +0.5 127,636 + -0.1 127,684 + -0.2 127,707 + GFF3363 0.11 +0.0 127,718 + GFF3363 0.12 -0.3 127,718 + GFF3363 0.12 +0.2 127,718 + GFF3363 0.12 -0.7 127,743 + GFF3363 0.13 +0.1 127,743 + GFF3363 0.13 +0.4 127,941 + GFF3363 0.25 -1.2 128,175 + GFF3363 0.39 +0.5 128,193 - GFF3363 0.40 -0.7 128,193 - GFF3363 0.40 +0.3 128,218 + GFF3363 0.42 -0.1 128,218 + GFF3363 0.42 +0.2 128,298 - GFF3363 0.47 -0.7 128,298 - GFF3363 0.47 -0.0 128,404 + GFF3363 0.53 -0.1 128,405 - GFF3363 0.53 -0.7 128,408 - GFF3363 0.53 +0.2 128,527 + GFF3363 0.61 +0.3 128,527 + GFF3363 0.61 +0.1 128,527 + GFF3363 0.61 -0.3 128,528 - GFF3363 0.61 +0.3 128,536 + GFF3363 0.61 -0.2 128,539 + GFF3363 0.61 -0.7 128,539 + GFF3363 0.61 -0.2 128,606 + GFF3363 0.65 +0.0 128,608 + GFF3363 0.65 +0.1 128,608 + GFF3363 0.65 -0.2 128,919 + GFF3363 0.84 -0.1 128,919 + GFF3363 0.84 +0.9 128,920 - GFF3363 0.84 -2.6 129,028 + +0.3 129,028 + +0.4 129,040 + +0.2 129,113 + +0.7 129,133 - +0.5 129,220 + -0.1 129,347 + GFF3364 0.16 -0.1 129,379 + GFF3364 0.19 +2.6 129,595 + GFF3364 0.42 -0.4 129,676 - GFF3364 0.50 -1.3 130,063 + -0.2 130,064 - -0.2 130,085 + +0.0
Or see this region's nucleotide sequence