Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3271 and GFF3272 are separated by 79 nucleotides GFF3272 and GFF3273 are separated by 7 nucleotides GFF3273 and GFF3274 are separated by 135 nucleotides
GFF3271 - Probable dipeptidase (EC 3.4.-.-), at 42,504 to 44,066
GFF3271
GFF3272 - Putative two component system histidine kinase YedV, at 44,146 to 45,495
GFF3272
GFF3273 - Putative two-component system response regulator YedW, at 45,503 to 46,183
GFF3273
GFF3274 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 46,319 to 46,729
GFF3274
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1
2
3 at 43.381 kb on + strand, within GFF3271 at 43.381 kb on + strand, within GFF3271 at 43.381 kb on + strand, within GFF3271 at 43.439 kb on - strand, within GFF3271 at 43.441 kb on - strand, within GFF3271 at 43.632 kb on - strand, within GFF3271 at 43.634 kb on - strand, within GFF3271 at 43.634 kb on - strand, within GFF3271 at 43.707 kb on - strand, within GFF3271 at 43.730 kb on - strand, within GFF3271 at 43.782 kb on - strand, within GFF3271 at 43.823 kb on + strand, within GFF3271 at 43.998 kb on + strand at 44.147 kb on + strand at 44.147 kb on + strand at 44.187 kb on + strand at 44.289 kb on + strand, within GFF3272 at 44.290 kb on - strand, within GFF3272 at 44.290 kb on - strand, within GFF3272 at 44.399 kb on - strand, within GFF3272 at 44.421 kb on - strand, within GFF3272 at 44.601 kb on + strand, within GFF3272 at 44.946 kb on + strand, within GFF3272 at 45.081 kb on + strand, within GFF3272 at 45.082 kb on - strand, within GFF3272 at 45.084 kb on + strand, within GFF3272 at 45.085 kb on - strand, within GFF3272 at 45.148 kb on + strand, within GFF3272 at 45.164 kb on - strand, within GFF3272 at 45.271 kb on + strand, within GFF3272 at 45.271 kb on + strand, within GFF3272 at 45.384 kb on + strand at 45.395 kb on + strand at 45.422 kb on + strand at 45.423 kb on - strand at 45.505 kb on - strand at 45.646 kb on + strand, within GFF3273 at 45.647 kb on - strand, within GFF3273 at 45.818 kb on - strand, within GFF3273 at 45.886 kb on + strand, within GFF3273 at 45.895 kb on - strand, within GFF3273 at 45.961 kb on + strand, within GFF3273 at 45.961 kb on + strand, within GFF3273 at 45.961 kb on + strand, within GFF3273 at 46.099 kb on - strand, within GFF3273 at 46.111 kb on - strand, within GFF3273 at 46.192 kb on + strand at 46.240 kb on + strand at 46.240 kb on + strand at 46.241 kb on - strand at 46.284 kb on + strand at 46.284 kb on + strand at 46.284 kb on + strand at 46.330 kb on + strand at 46.330 kb on + strand at 46.331 kb on - strand at 46.331 kb on - strand at 46.332 kb on + strand at 46.348 kb on - strand at 46.348 kb on - strand at 46.411 kb on + strand, within GFF3274 at 46.412 kb on - strand, within GFF3274
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 43,381 + GFF3271 0.56 +0.0 43,381 + GFF3271 0.56 +0.3 43,381 + GFF3271 0.56 +0.3 43,439 - GFF3271 0.60 -0.6 43,441 - GFF3271 0.60 +0.4 43,632 - GFF3271 0.72 -0.4 43,634 - GFF3271 0.72 +0.3 43,634 - GFF3271 0.72 +0.7 43,707 - GFF3271 0.77 -0.1 43,730 - GFF3271 0.78 -0.1 43,782 - GFF3271 0.82 -0.6 43,823 + GFF3271 0.84 -0.5 43,998 + +0.6 44,147 + -0.2 44,147 + +0.6 44,187 + +0.2 44,289 + GFF3272 0.11 -0.4 44,290 - GFF3272 0.11 +0.2 44,290 - GFF3272 0.11 -0.4 44,399 - GFF3272 0.19 -0.3 44,421 - GFF3272 0.20 -0.6 44,601 + GFF3272 0.34 -0.3 44,946 + GFF3272 0.59 -0.2 45,081 + GFF3272 0.69 -0.5 45,082 - GFF3272 0.69 +0.1 45,084 + GFF3272 0.69 +0.0 45,085 - GFF3272 0.70 +0.4 45,148 + GFF3272 0.74 -0.2 45,164 - GFF3272 0.75 -0.6 45,271 + GFF3272 0.83 -0.1 45,271 + GFF3272 0.83 +0.5 45,384 + -0.1 45,395 + +0.1 45,422 + +0.2 45,423 - -0.1 45,505 - -0.7 45,646 + GFF3273 0.21 -0.4 45,647 - GFF3273 0.21 -1.0 45,818 - GFF3273 0.46 +0.2 45,886 + GFF3273 0.56 +0.1 45,895 - GFF3273 0.58 -0.0 45,961 + GFF3273 0.67 -0.9 45,961 + GFF3273 0.67 +0.4 45,961 + GFF3273 0.67 +3.2 46,099 - GFF3273 0.88 -0.2 46,111 - GFF3273 0.89 +0.3 46,192 + +0.4 46,240 + +0.2 46,240 + -0.2 46,241 - -0.1 46,284 + -0.2 46,284 + +0.1 46,284 + -0.3 46,330 + -0.3 46,330 + -0.0 46,331 - -0.0 46,331 - -0.4 46,332 + -0.2 46,348 - +0.4 46,348 - -0.7 46,411 + GFF3274 0.22 +0.1 46,412 - GFF3274 0.23 -0.3
Or see this region's nucleotide sequence