Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3242 and GFF3243 overlap by 4 nucleotides GFF3243 and GFF3244 overlap by 46 nucleotides GFF3244 and GFF3245 are separated by 430 nucleotides
GFF3242 - Paraquat-inducible protein B, at 17,051 to 18,691
GFF3242
GFF3243 - Paraquat-inducible protein B, at 18,688 to 19,251
GFF3243
GFF3244 - hypothetical protein, at 19,206 to 19,343
GFF3244
GFF3245 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 19,774 to 20,292
GFF3245
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.878 kb on + strand, within GFF3242 at 17.977 kb on + strand, within GFF3242 at 18.033 kb on + strand, within GFF3242 at 18.053 kb on - strand, within GFF3242 at 18.198 kb on - strand, within GFF3242 at 18.198 kb on - strand, within GFF3242 at 18.260 kb on + strand, within GFF3242 at 18.398 kb on - strand, within GFF3242 at 18.398 kb on - strand, within GFF3242 at 18.430 kb on + strand, within GFF3242 at 18.430 kb on + strand, within GFF3242 at 18.431 kb on - strand, within GFF3242 at 18.442 kb on + strand, within GFF3242 at 18.542 kb on + strand at 18.543 kb on - strand at 18.656 kb on - strand at 18.760 kb on + strand, within GFF3243 at 18.763 kb on + strand, within GFF3243 at 18.824 kb on + strand, within GFF3243 at 18.824 kb on + strand, within GFF3243 at 18.845 kb on + strand, within GFF3243 at 18.853 kb on + strand, within GFF3243 at 18.898 kb on + strand, within GFF3243 at 18.899 kb on - strand, within GFF3243 at 19.168 kb on + strand, within GFF3243 at 19.261 kb on - strand, within GFF3244 at 19.261 kb on - strand, within GFF3244 at 19.368 kb on + strand at 19.430 kb on + strand at 19.490 kb on + strand at 19.555 kb on + strand at 19.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 17,878 + GFF3242 0.50 -1.2 17,977 + GFF3242 0.56 -0.2 18,033 + GFF3242 0.60 -0.2 18,053 - GFF3242 0.61 +0.3 18,198 - GFF3242 0.70 +0.8 18,198 - GFF3242 0.70 +0.7 18,260 + GFF3242 0.74 -0.3 18,398 - GFF3242 0.82 -0.5 18,398 - GFF3242 0.82 -0.1 18,430 + GFF3242 0.84 -0.1 18,430 + GFF3242 0.84 -0.2 18,431 - GFF3242 0.84 +0.5 18,442 + GFF3242 0.85 -0.4 18,542 + -0.2 18,543 - -0.1 18,656 - +0.0 18,760 + GFF3243 0.13 -0.1 18,763 + GFF3243 0.13 -0.3 18,824 + GFF3243 0.24 -0.5 18,824 + GFF3243 0.24 -0.4 18,845 + GFF3243 0.28 -0.4 18,853 + GFF3243 0.29 -0.2 18,898 + GFF3243 0.37 +0.2 18,899 - GFF3243 0.37 -0.8 19,168 + GFF3243 0.85 -0.4 19,261 - GFF3244 0.40 -0.5 19,261 - GFF3244 0.40 -0.5 19,368 + +0.0 19,430 + -3.3 19,490 + -0.3 19,555 + -0.4 19,761 - -0.1
Or see this region's nucleotide sequence