Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3045

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
58,026	+		GFF3044	0.13	-0.1
58,027	-		GFF3044	0.14	+0.7
58,030	+		GFF3044	0.17	+0.2
58,031	-		GFF3044	0.17	+0.5
58,031	-		GFF3044	0.17	-1.7
58,058	-		GFF3044	0.39	-0.0
58,172	-				-1.2
58,436	+				+0.2
58,800	+		GFF3045	0.23	+0.3
58,858	+		GFF3045	0.28	+0.5
58,896	+		GFF3045	0.30	+0.2
58,945	+		GFF3045	0.34	+0.1
58,946	-		GFF3045	0.34	+0.4
58,969	+		GFF3045	0.35	-0.0
59,288	-		GFF3045	0.58	-0.8
59,288	-		GFF3045	0.58	+0.5
59,518	+		GFF3045	0.75	+0.1
59,668	-		GFF3045	0.86	+0.2
59,734	+				+0.1
59,735	-				-0.1
59,750	+				+1.1
59,750	+				-1.5
59,751	-				+0.3
60,065	-		GFF3046	0.24	+0.0
60,066	+		GFF3046	0.24	+0.2
60,067	-		GFF3046	0.24	+0.1
60,110	-		GFF3046	0.33	+0.6
60,159	+		GFF3046	0.43	+0.1
60,162	-		GFF3046	0.43	+0.3
60,285	+		GFF3046	0.68	-0.7
60,286	-		GFF3046	0.68	+0.1
60,387	-		GFF3046	0.88	-0.1
60,488	-				+1.3
60,720	+		GFF3047	0.26	+1.2
60,740	+		GFF3047	0.28	-0.2
60,740	+		GFF3047	0.28	-0.4
60,742	+		GFF3047	0.29	+0.2
60,859	+		GFF3047	0.45	+0.1
60,859	+		GFF3047	0.45	-0.1