Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF274 and GFF275 overlap by 1 nucleotides GFF275 and GFF276 are separated by 38 nucleotides GFF276 and GFF277 are separated by 11 nucleotides
GFF274 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 50,523 to 51,854
GFF274
GFF275 - FIG000605: protein co-occurring with transport systems (COG1739), at 51,854 to 52,468
GFF275
GFF276 - Potassium uptake protein TrkH, at 52,507 to 53,958
GFF276
GFF277 - Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-), at 53,970 to 54,515
GFF277
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 51.557 kb on - strand, within GFF274 at 51.557 kb on - strand, within GFF274 at 51.619 kb on - strand, within GFF274 at 51.684 kb on + strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.794 kb on + strand at 51.853 kb on - strand at 51.922 kb on + strand, within GFF275 at 51.923 kb on - strand, within GFF275 at 51.928 kb on - strand, within GFF275 at 51.948 kb on + strand, within GFF275 at 51.949 kb on - strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.168 kb on + strand, within GFF275 at 52.202 kb on + strand, within GFF275 at 52.228 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.287 kb on - strand, within GFF275 at 52.318 kb on - strand, within GFF275 at 52.467 kb on - strand at 53.067 kb on + strand, within GFF276 at 53.067 kb on + strand, within GFF276 at 53.071 kb on + strand, within GFF276 at 53.072 kb on - strand, within GFF276 at 53.072 kb on - strand, within GFF276 at 53.218 kb on - strand, within GFF276 at 53.260 kb on - strand, within GFF276 at 53.282 kb on + strand, within GFF276 at 53.283 kb on - strand, within GFF276 at 53.395 kb on - strand, within GFF276 at 53.398 kb on + strand, within GFF276 at 53.520 kb on - strand, within GFF276 at 53.567 kb on + strand, within GFF276 at 53.649 kb on + strand, within GFF276 at 53.652 kb on + strand, within GFF276 at 53.653 kb on - strand, within GFF276 at 53.653 kb on - strand, within GFF276 at 53.738 kb on + strand, within GFF276 at 53.740 kb on - strand, within GFF276 at 53.751 kb on + strand, within GFF276 at 53.805 kb on + strand, within GFF276 at 53.879 kb on + strand at 53.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 51,557 - GFF274 0.78 +0.2 51,557 - GFF274 0.78 -0.1 51,619 - GFF274 0.82 +0.4 51,684 + GFF274 0.87 -0.1 51,685 - GFF274 0.87 -0.2 51,685 - GFF274 0.87 -0.2 51,794 + -0.3 51,853 - -0.1 51,922 + GFF275 0.11 -0.1 51,923 - GFF275 0.11 -0.4 51,928 - GFF275 0.12 +0.2 51,948 + GFF275 0.15 -0.1 51,949 - GFF275 0.15 +0.0 52,160 + GFF275 0.50 -0.9 52,160 + GFF275 0.50 +0.4 52,160 + GFF275 0.50 -0.2 52,160 + GFF275 0.50 -0.0 52,160 + GFF275 0.50 -0.6 52,161 - GFF275 0.50 -0.3 52,161 - GFF275 0.50 +0.6 52,161 - GFF275 0.50 +0.2 52,168 + GFF275 0.51 +0.0 52,202 + GFF275 0.57 -1.0 52,228 - GFF275 0.61 +0.1 52,271 - GFF275 0.68 -0.5 52,271 - GFF275 0.68 -0.4 52,287 - GFF275 0.70 +0.5 52,318 - GFF275 0.75 +0.0 52,467 - +0.2 53,067 + GFF276 0.39 -1.4 53,067 + GFF276 0.39 -2.2 53,071 + GFF276 0.39 +0.2 53,072 - GFF276 0.39 +2.8 53,072 - GFF276 0.39 -1.0 53,218 - GFF276 0.49 -0.2 53,260 - GFF276 0.52 -2.2 53,282 + GFF276 0.53 -1.5 53,283 - GFF276 0.53 -1.2 53,395 - GFF276 0.61 -1.0 53,398 + GFF276 0.61 -1.8 53,520 - GFF276 0.70 -2.2 53,567 + GFF276 0.73 -1.1 53,649 + GFF276 0.79 -1.9 53,652 + GFF276 0.79 -1.9 53,653 - GFF276 0.79 -1.2 53,653 - GFF276 0.79 -1.9 53,738 + GFF276 0.85 -0.2 53,740 - GFF276 0.85 -1.4 53,751 + GFF276 0.86 -1.7 53,805 + GFF276 0.89 -1.4 53,879 + -1.5 53,913 - -1.1
Or see this region's nucleotide sequence