Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF273 and GFF274 are separated by 189 nucleotides GFF274 and GFF275 overlap by 1 nucleotides GFF275 and GFF276 are separated by 38 nucleotides
GFF273 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 48,144 to 50,333
GFF273
GFF274 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 50,523 to 51,854
GFF274
GFF275 - FIG000605: protein co-occurring with transport systems (COG1739), at 51,854 to 52,468
GFF275
GFF276 - Potassium uptake protein TrkH, at 52,507 to 53,958
GFF276
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-2
-1
0
1 at 49.625 kb on + strand, within GFF273 at 49.913 kb on + strand, within GFF273 at 49.914 kb on - strand, within GFF273 at 50.032 kb on - strand, within GFF273 at 50.057 kb on + strand, within GFF273 at 50.058 kb on - strand, within GFF273 at 50.156 kb on + strand at 50.309 kb on - strand at 50.325 kb on - strand at 50.326 kb on + strand at 50.326 kb on + strand at 50.618 kb on + strand at 50.793 kb on - strand, within GFF274 at 50.982 kb on + strand, within GFF274 at 50.983 kb on - strand, within GFF274 at 50.991 kb on + strand, within GFF274 at 50.991 kb on + strand, within GFF274 at 50.992 kb on - strand, within GFF274 at 51.162 kb on + strand, within GFF274 at 51.207 kb on + strand, within GFF274 at 51.354 kb on - strand, within GFF274 at 51.412 kb on - strand, within GFF274 at 51.557 kb on - strand, within GFF274 at 51.557 kb on - strand, within GFF274 at 51.619 kb on - strand, within GFF274 at 51.684 kb on + strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.794 kb on + strand at 51.853 kb on - strand at 51.922 kb on + strand, within GFF275 at 51.923 kb on - strand, within GFF275 at 51.928 kb on - strand, within GFF275 at 51.948 kb on + strand, within GFF275 at 51.949 kb on - strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.168 kb on + strand, within GFF275 at 52.202 kb on + strand, within GFF275 at 52.228 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.287 kb on - strand, within GFF275 at 52.318 kb on - strand, within GFF275 at 52.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 49,625 + GFF273 0.68 -1.4 49,913 + GFF273 0.81 -0.5 49,914 - GFF273 0.81 -0.7 50,032 - GFF273 0.86 -0.5 50,057 + GFF273 0.87 +0.0 50,058 - GFF273 0.87 +0.2 50,156 + -2.1 50,309 - +0.3 50,325 - -0.4 50,326 + -0.1 50,326 + +0.4 50,618 + +0.0 50,793 - GFF274 0.20 -0.0 50,982 + GFF274 0.34 +0.1 50,983 - GFF274 0.35 +0.3 50,991 + GFF274 0.35 +0.2 50,991 + GFF274 0.35 +0.3 50,992 - GFF274 0.35 -0.1 51,162 + GFF274 0.48 -0.1 51,207 + GFF274 0.51 -0.1 51,354 - GFF274 0.62 +0.5 51,412 - GFF274 0.67 +0.4 51,557 - GFF274 0.78 +0.2 51,557 - GFF274 0.78 -0.1 51,619 - GFF274 0.82 +0.4 51,684 + GFF274 0.87 -0.1 51,685 - GFF274 0.87 -0.2 51,685 - GFF274 0.87 -0.2 51,794 + -0.3 51,853 - -0.1 51,922 + GFF275 0.11 -0.1 51,923 - GFF275 0.11 -0.4 51,928 - GFF275 0.12 +0.2 51,948 + GFF275 0.15 -0.1 51,949 - GFF275 0.15 +0.0 52,160 + GFF275 0.50 -0.9 52,160 + GFF275 0.50 +0.4 52,160 + GFF275 0.50 -0.2 52,160 + GFF275 0.50 -0.0 52,160 + GFF275 0.50 -0.6 52,161 - GFF275 0.50 -0.3 52,161 - GFF275 0.50 +0.6 52,161 - GFF275 0.50 +0.2 52,168 + GFF275 0.51 +0.0 52,202 + GFF275 0.57 -1.0 52,228 - GFF275 0.61 +0.1 52,271 - GFF275 0.68 -0.5 52,271 - GFF275 0.68 -0.4 52,287 - GFF275 0.70 +0.5 52,318 - GFF275 0.75 +0.0 52,467 - +0.2
Or see this region's nucleotide sequence