Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF258 and GFF259 are separated by 139 nucleotides GFF259 and GFF260 are separated by 95 nucleotides GFF260 and GFF261 are separated by 9 nucleotides
GFF258 - Uridine phosphorylase (EC 2.4.2.3), at 33,698 to 34,459
GFF258
GFF259 - DNA recombination protein RmuC, at 34,599 to 36,029
GFF259
GFF260 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163), at 36,125 to 36,880
GFF260
GFF261 - Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes, at 36,890 to 37,495
GFF261
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 33.608 kb on + strand at 33.647 kb on - strand at 33.695 kb on + strand at 33.696 kb on - strand at 33.696 kb on - strand at 33.697 kb on + strand at 33.895 kb on + strand, within GFF258 at 33.958 kb on + strand, within GFF258 at 33.958 kb on + strand, within GFF258 at 33.958 kb on + strand, within GFF258 at 33.959 kb on - strand, within GFF258 at 34.211 kb on + strand, within GFF258 at 34.247 kb on - strand, within GFF258 at 34.247 kb on - strand, within GFF258 at 34.298 kb on - strand, within GFF258 at 34.457 kb on + strand at 34.607 kb on + strand at 34.607 kb on + strand at 34.608 kb on - strand at 34.608 kb on - strand at 34.613 kb on + strand at 34.613 kb on + strand at 34.614 kb on - strand at 34.737 kb on - strand at 34.796 kb on + strand, within GFF259 at 34.799 kb on + strand, within GFF259 at 34.823 kb on + strand, within GFF259 at 34.823 kb on + strand, within GFF259 at 34.826 kb on + strand, within GFF259 at 34.826 kb on + strand, within GFF259 at 34.826 kb on + strand, within GFF259 at 34.826 kb on + strand, within GFF259 at 34.827 kb on - strand, within GFF259 at 34.827 kb on - strand, within GFF259 at 34.827 kb on - strand, within GFF259 at 35.018 kb on + strand, within GFF259 at 35.142 kb on - strand, within GFF259 at 35.199 kb on - strand, within GFF259 at 35.268 kb on + strand, within GFF259 at 35.292 kb on - strand, within GFF259 at 35.422 kb on - strand, within GFF259 at 35.422 kb on - strand, within GFF259 at 35.441 kb on - strand, within GFF259 at 35.496 kb on + strand, within GFF259 at 35.497 kb on - strand, within GFF259 at 35.497 kb on - strand, within GFF259 at 35.543 kb on + strand, within GFF259 at 35.580 kb on - strand, within GFF259 at 35.597 kb on - strand, within GFF259 at 35.621 kb on + strand, within GFF259 at 35.621 kb on + strand, within GFF259 at 35.621 kb on + strand, within GFF259 at 35.622 kb on - strand, within GFF259 at 35.629 kb on + strand, within GFF259 at 35.730 kb on - strand, within GFF259 at 35.736 kb on + strand, within GFF259 at 35.736 kb on + strand, within GFF259 at 35.765 kb on + strand, within GFF259 at 35.765 kb on + strand, within GFF259 at 35.766 kb on - strand, within GFF259 at 36.042 kb on - strand at 36.046 kb on + strand at 36.063 kb on - strand at 36.878 kb on + strand at 36.984 kb on + strand, within GFF261
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 33,608 + -0.4 33,647 - +0.0 33,695 + -0.3 33,696 - -0.1 33,696 - +0.2 33,697 + +0.4 33,895 + GFF258 0.26 +0.4 33,958 + GFF258 0.34 -0.4 33,958 + GFF258 0.34 -0.6 33,958 + GFF258 0.34 +0.1 33,959 - GFF258 0.34 +0.2 34,211 + GFF258 0.67 +0.2 34,247 - GFF258 0.72 -0.6 34,247 - GFF258 0.72 +0.3 34,298 - GFF258 0.79 +0.0 34,457 + -0.3 34,607 + -0.7 34,607 + -0.3 34,608 - -0.2 34,608 - -0.8 34,613 + -0.6 34,613 + -2.5 34,614 - -0.3 34,737 - -0.3 34,796 + GFF259 0.14 -0.5 34,799 + GFF259 0.14 -0.8 34,823 + GFF259 0.16 -0.3 34,823 + GFF259 0.16 +0.2 34,826 + GFF259 0.16 -0.5 34,826 + GFF259 0.16 -0.6 34,826 + GFF259 0.16 -0.9 34,826 + GFF259 0.16 +0.4 34,827 - GFF259 0.16 +0.6 34,827 - GFF259 0.16 -0.1 34,827 - GFF259 0.16 +0.7 35,018 + GFF259 0.29 -0.5 35,142 - GFF259 0.38 -0.8 35,199 - GFF259 0.42 +0.1 35,268 + GFF259 0.47 -0.2 35,292 - GFF259 0.48 +0.5 35,422 - GFF259 0.58 -0.3 35,422 - GFF259 0.58 -1.5 35,441 - GFF259 0.59 -0.3 35,496 + GFF259 0.63 -0.7 35,497 - GFF259 0.63 +0.3 35,497 - GFF259 0.63 -0.6 35,543 + GFF259 0.66 -0.7 35,580 - GFF259 0.69 -0.2 35,597 - GFF259 0.70 -0.1 35,621 + GFF259 0.71 -0.3 35,621 + GFF259 0.71 -0.2 35,621 + GFF259 0.71 +0.8 35,622 - GFF259 0.71 -0.4 35,629 + GFF259 0.72 -0.5 35,730 - GFF259 0.79 -1.6 35,736 + GFF259 0.79 -0.1 35,736 + GFF259 0.79 +0.7 35,765 + GFF259 0.81 -0.4 35,765 + GFF259 0.81 -0.2 35,766 - GFF259 0.82 -0.5 36,042 - -0.2 36,046 + +0.4 36,063 - -0.2 36,878 + +0.1 36,984 + GFF261 0.16 -0.1
Or see this region's nucleotide sequence