Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2500

Experiment: Dictyostellum sp.mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2498 and GFF2499 are separated by 344 nucleotidesGFF2499 and GFF2500 are separated by 119 nucleotidesGFF2500 and GFF2501 are separated by 426 nucleotides GFF2498 - Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5), at 15,304 to 17,346 GFF2498 GFF2499 - Conidiation-specific protein 10, at 17,691 to 17,873 GFF2499 GFF2500 - C-terminal domain of CinA paralog, YdeJ, at 17,993 to 18,520 GFF2500 GFF2501 - FIG00638667: hypothetical protein, at 18,947 to 19,339 GFF2501 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1at 17.003 kb on + strand, within GFF2498at 17.138 kb on - strand, within GFF2498at 17.143 kb on + strandat 18.287 kb on + strand, within GFF2500at 18.331 kb on - strand, within GFF2500at 18.331 kb on - strand, within GFF2500at 18.753 kb on + strandat 18.765 kb on + strandat 19.067 kb on + strand, within GFF2501at 19.396 kb on - strandat 19.447 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
remove
17,003 + GFF2498 0.83 -0.8
17,138 - GFF2498 0.90 +0.1
17,143 + +0.3
18,287 + GFF2500 0.56 -0.4
18,331 - GFF2500 0.64 -0.3
18,331 - GFF2500 0.64 -0.4
18,753 + -0.7
18,765 + -0.3
19,067 + GFF2501 0.31 +0.1
19,396 - +0.3
19,447 - +0.7

Or see this region's nucleotide sequence