Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2190

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2189 and GFF2190 are separated by 185 nucleotidesGFF2190 and GFF2191 are separated by 387 nucleotides GFF2189 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 37,922 to 39,622 GFF2189 GFF2190 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 39,808 to 41,769 GFF2190 GFF2191 - Beta-lactamase class C and other penicillin binding proteins, at 42,157 to 43,455 GFF2191 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -1 0 1at 38.871 kb on + strand, within GFF2189at 38.871 kb on + strand, within GFF2189at 38.871 kb on + strand, within GFF2189at 38.872 kb on - strand, within GFF2189at 39.109 kb on + strand, within GFF2189at 39.136 kb on + strand, within GFF2189at 39.137 kb on - strand, within GFF2189at 39.141 kb on - strand, within GFF2189at 39.240 kb on + strand, within GFF2189at 39.250 kb on + strand, within GFF2189at 39.251 kb on - strand, within GFF2189at 39.354 kb on + strand, within GFF2189at 39.557 kb on - strandat 39.571 kb on + strandat 39.572 kb on - strandat 39.573 kb on + strandat 39.702 kb on + strandat 39.702 kb on + strandat 39.703 kb on - strandat 39.703 kb on - strandat 39.753 kb on - strandat 39.819 kb on + strandat 39.832 kb on - strandat 39.934 kb on - strandat 40.006 kb on - strand, within GFF2190at 40.032 kb on + strand, within GFF2190at 40.032 kb on + strand, within GFF2190at 40.035 kb on + strand, within GFF2190at 40.122 kb on - strand, within GFF2190at 40.674 kb on + strand, within GFF2190at 40.675 kb on - strand, within GFF2190at 40.713 kb on + strand, within GFF2190at 40.723 kb on + strand, within GFF2190at 40.724 kb on - strand, within GFF2190at 40.725 kb on + strand, within GFF2190at 40.725 kb on + strand, within GFF2190at 40.775 kb on + strand, within GFF2190at 41.044 kb on + strand, within GFF2190at 41.045 kb on - strand, within GFF2190at 41.122 kb on + strand, within GFF2190at 41.123 kb on - strand, within GFF2190at 41.258 kb on + strand, within GFF2190at 41.302 kb on + strand, within GFF2190at 41.382 kb on + strand, within GFF2190at 41.412 kb on + strand, within GFF2190at 41.492 kb on + strand, within GFF2190at 41.565 kb on + strand, within GFF2190at 41.565 kb on + strand, within GFF2190at 41.602 kb on - strandat 41.614 kb on - strandat 41.768 kb on - strandat 41.768 kb on - strandat 42.025 kb on - strandat 42.144 kb on - strandat 42.173 kb on + strandat 42.173 kb on + strandat 42.197 kb on + strandat 42.215 kb on - strandat 42.298 kb on - strand, within GFF2191at 42.350 kb on + strand, within GFF2191at 42.627 kb on + strand, within GFF2191at 42.627 kb on + strand, within GFF2191at 42.628 kb on - strand, within GFF2191at 42.739 kb on - strand, within GFF2191

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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38,871 + GFF2189 0.56 -0.4
38,871 + GFF2189 0.56 -0.0
38,871 + GFF2189 0.56 -0.4
38,872 - GFF2189 0.56 -0.1
39,109 + GFF2189 0.70 -0.2
39,136 + GFF2189 0.71 -0.1
39,137 - GFF2189 0.71 +0.0
39,141 - GFF2189 0.72 +1.1
39,240 + GFF2189 0.77 +0.1
39,250 + GFF2189 0.78 +0.2
39,251 - GFF2189 0.78 -0.6
39,354 + GFF2189 0.84 -0.5
39,557 - +0.2
39,571 + -0.6
39,572 - +0.9
39,573 + -0.0
39,702 + +1.1
39,702 + +0.1
39,703 - +1.1
39,703 - +0.1
39,753 - +0.0
39,819 + +0.2
39,832 - +0.1
39,934 - +0.4
40,006 - GFF2190 0.10 +0.1
40,032 + GFF2190 0.11 +0.4
40,032 + GFF2190 0.11 -0.8
40,035 + GFF2190 0.12 +0.1
40,122 - GFF2190 0.16 -0.2
40,674 + GFF2190 0.44 +0.6
40,675 - GFF2190 0.44 -0.6
40,713 + GFF2190 0.46 -0.1
40,723 + GFF2190 0.47 -0.2
40,724 - GFF2190 0.47 -1.3
40,725 + GFF2190 0.47 -0.0
40,725 + GFF2190 0.47 -0.1
40,775 + GFF2190 0.49 +0.0
41,044 + GFF2190 0.63 +0.4
41,045 - GFF2190 0.63 -0.4
41,122 + GFF2190 0.67 +0.2
41,123 - GFF2190 0.67 -1.1
41,258 + GFF2190 0.74 +0.0
41,302 + GFF2190 0.76 -1.6
41,382 + GFF2190 0.80 +0.3
41,412 + GFF2190 0.82 +0.1
41,492 + GFF2190 0.86 -0.2
41,565 + GFF2190 0.90 -0.1
41,565 + GFF2190 0.90 -0.1
41,602 - -0.3
41,614 - -0.2
41,768 - +0.1
41,768 - +0.2
42,025 - +0.3
42,144 - +0.3
42,173 + +0.1
42,173 + +0.2
42,197 + +0.2
42,215 - +0.1
42,298 - GFF2191 0.11 -0.7
42,350 + GFF2191 0.15 -0.0
42,627 + GFF2191 0.36 -0.1
42,627 + GFF2191 0.36 +0.2
42,628 - GFF2191 0.36 +0.0
42,739 - GFF2191 0.45 +0.4

Or see this region's nucleotide sequence