Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1939 and GFF1940 are separated by 172 nucleotides GFF1940 and GFF1941 are separated by 168 nucleotides GFF1941 and GFF1942 overlap by 1 nucleotides GFF1942 and GFF1943 are separated by 66 nucleotides
GFF1939 - FIG00643583: hypothetical protein, at 132,341 to 132,715
GFF1939
GFF1940 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 132,888 to 133,136
GFF1940
GFF1941 - FIG074102: hypothetical protein, at 133,305 to 133,673
GFF1941
GFF1942 - FIG00545237: hypothetical protein, at 133,673 to 134,191
GFF1942
GFF1943 - Putative inner membrane protein, at 134,258 to 134,869
GFF1943
Position (kb) 133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.486 kb on - strand, within GFF1939 at 132.543 kb on + strand, within GFF1939 at 132.562 kb on + strand, within GFF1939 at 132.631 kb on - strand, within GFF1939 at 133.101 kb on - strand, within GFF1940 at 133.427 kb on + strand, within GFF1941 at 133.428 kb on - strand, within GFF1941 at 133.431 kb on + strand, within GFF1941 at 133.487 kb on + strand, within GFF1941 at 133.653 kb on - strand at 133.653 kb on - strand at 133.653 kb on - strand at 133.714 kb on + strand at 133.763 kb on + strand, within GFF1942 at 133.843 kb on + strand, within GFF1942 at 133.844 kb on - strand, within GFF1942 at 133.872 kb on + strand, within GFF1942 at 133.884 kb on - strand, within GFF1942 at 133.911 kb on - strand, within GFF1942 at 133.915 kb on + strand, within GFF1942 at 133.919 kb on + strand, within GFF1942 at 133.957 kb on - strand, within GFF1942 at 134.120 kb on + strand, within GFF1942 at 134.645 kb on - strand, within GFF1943
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 132,486 - GFF1939 0.39 -0.4 132,543 + GFF1939 0.54 -0.3 132,562 + GFF1939 0.59 -0.2 132,631 - GFF1939 0.77 -1.6 133,101 - GFF1940 0.86 +0.3 133,427 + GFF1941 0.33 +1.3 133,428 - GFF1941 0.33 +0.2 133,431 + GFF1941 0.34 +1.8 133,487 + GFF1941 0.49 +0.1 133,653 - -0.0 133,653 - +0.2 133,653 - +0.7 133,714 + +0.5 133,763 + GFF1942 0.17 +0.5 133,843 + GFF1942 0.33 +0.4 133,844 - GFF1942 0.33 -0.7 133,872 + GFF1942 0.38 +0.3 133,884 - GFF1942 0.41 +1.5 133,911 - GFF1942 0.46 -0.6 133,915 + GFF1942 0.47 +0.9 133,919 + GFF1942 0.47 +0.5 133,957 - GFF1942 0.55 +0.2 134,120 + GFF1942 0.86 -2.4 134,645 - GFF1943 0.63 +0.2
Or see this region's nucleotide sequence