Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1866 and GFF1867 overlap by 4 nucleotides GFF1867 and GFF1868 overlap by 1 nucleotides GFF1868 and GFF1869 are separated by 14 nucleotides GFF1869 and GFF1870 overlap by 4 nucleotides
GFF1866 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 58,066 to 59,433
GFF1866
GFF1867 - O-succinylbenzoate synthase (EC 4.2.1.113), at 59,430 to 60,392
GFF1867
GFF1868 - Naphthoate synthase (EC 4.1.3.36), at 60,392 to 61,249
GFF1868
GFF1869 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase (EC 4.2.99.20), at 61,264 to 62,022
GFF1869
GFF1870 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9), at 62,019 to 63,689
GFF1870
Position (kb) 60
61
62 Strain fitness (log2 ratio) -1
0
1 at 59.523 kb on - strand at 59.664 kb on - strand, within GFF1867 at 59.685 kb on - strand, within GFF1867 at 59.864 kb on - strand, within GFF1867 at 59.864 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.302 kb on - strand at 60.376 kb on - strand at 60.681 kb on + strand, within GFF1868 at 60.739 kb on + strand, within GFF1868 at 60.742 kb on - strand, within GFF1868 at 61.034 kb on - strand, within GFF1868 at 61.409 kb on - strand, within GFF1869 at 61.799 kb on + strand, within GFF1869 at 61.812 kb on + strand, within GFF1869 at 61.892 kb on + strand, within GFF1869 at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.178 kb on - strand at 62.224 kb on + strand, within GFF1870 at 62.224 kb on + strand, within GFF1870 at 62.224 kb on + strand, within GFF1870
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 59,523 - +0.7 59,664 - GFF1867 0.24 -0.1 59,685 - GFF1867 0.26 +1.2 59,864 - GFF1867 0.45 +0.1 59,864 - GFF1867 0.45 -0.6 60,202 - GFF1867 0.80 +0.5 60,202 - GFF1867 0.80 +1.4 60,202 - GFF1867 0.80 +0.1 60,302 - -0.3 60,376 - -0.1 60,681 + GFF1868 0.34 -0.5 60,739 + GFF1868 0.40 -0.3 60,742 - GFF1868 0.41 -0.1 61,034 - GFF1868 0.75 -0.3 61,409 - GFF1869 0.19 +0.3 61,799 + GFF1869 0.70 -0.3 61,812 + GFF1869 0.72 +0.7 61,892 + GFF1869 0.83 +0.5 62,022 + +0.0 62,022 + +0.2 62,022 + +0.5 62,022 + -0.2 62,022 + -0.8 62,178 - +0.4 62,224 + GFF1870 0.12 -0.2 62,224 + GFF1870 0.12 -0.2 62,224 + GFF1870 0.12 -0.2
Or see this region's nucleotide sequence