Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1860 and GFF1861 overlap by 4 nucleotides GFF1861 and GFF1862 overlap by 4 nucleotides
GFF1860 - UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305) / UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13), at 52,486 to 54,468
GFF1860
GFF1861 - Polymyxin resistance protein PmrJ, predicted deacetylase, at 54,465 to 55,364
GFF1861
GFF1862 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 55,361 to 57,007
GFF1862
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 53.516 kb on - strand, within GFF1860 at 53.589 kb on + strand, within GFF1860 at 53.757 kb on + strand, within GFF1860 at 53.791 kb on + strand, within GFF1860 at 53.792 kb on - strand, within GFF1860 at 54.174 kb on + strand, within GFF1860 at 54.204 kb on + strand, within GFF1860 at 54.243 kb on + strand, within GFF1860 at 54.304 kb on - strand at 54.307 kb on + strand at 54.308 kb on - strand at 54.497 kb on + strand at 54.649 kb on + strand, within GFF1861 at 54.778 kb on + strand, within GFF1861 at 54.969 kb on + strand, within GFF1861 at 54.970 kb on - strand, within GFF1861 at 54.971 kb on + strand, within GFF1861 at 55.054 kb on + strand, within GFF1861 at 55.153 kb on - strand, within GFF1861 at 55.155 kb on - strand, within GFF1861 at 55.155 kb on - strand, within GFF1861 at 55.155 kb on - strand, within GFF1861 at 55.301 kb on - strand at 55.412 kb on + strand at 55.413 kb on - strand at 55.415 kb on + strand at 55.415 kb on + strand at 55.416 kb on - strand at 55.687 kb on + strand, within GFF1862 at 55.739 kb on + strand, within GFF1862 at 55.755 kb on - strand, within GFF1862 at 55.791 kb on - strand, within GFF1862 at 55.893 kb on + strand, within GFF1862 at 55.920 kb on + strand, within GFF1862 at 56.141 kb on + strand, within GFF1862 at 56.300 kb on + strand, within GFF1862 at 56.300 kb on + strand, within GFF1862 at 56.300 kb on + strand, within GFF1862 at 56.300 kb on + strand, within GFF1862 at 56.301 kb on - strand, within GFF1862 at 56.301 kb on - strand, within GFF1862 at 56.301 kb on - strand, within GFF1862 at 56.301 kb on - strand, within GFF1862 at 56.301 kb on - strand, within GFF1862 at 56.362 kb on - strand, within GFF1862
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 53,516 - GFF1860 0.52 +1.0 53,589 + GFF1860 0.56 +0.0 53,757 + GFF1860 0.64 +0.0 53,791 + GFF1860 0.66 -0.4 53,792 - GFF1860 0.66 +0.0 54,174 + GFF1860 0.85 -0.5 54,204 + GFF1860 0.87 +0.4 54,243 + GFF1860 0.89 +0.6 54,304 - +0.1 54,307 + -0.1 54,308 - -0.2 54,497 + -1.7 54,649 + GFF1861 0.20 -0.3 54,778 + GFF1861 0.35 -1.1 54,969 + GFF1861 0.56 -0.4 54,970 - GFF1861 0.56 -0.6 54,971 + GFF1861 0.56 -0.7 55,054 + GFF1861 0.65 +0.3 55,153 - GFF1861 0.76 -0.6 55,155 - GFF1861 0.77 -0.9 55,155 - GFF1861 0.77 -1.8 55,155 - GFF1861 0.77 +0.9 55,301 - -0.1 55,412 + +0.0 55,413 - +0.2 55,415 + -0.1 55,415 + +0.1 55,416 - +0.4 55,687 + GFF1862 0.20 -0.3 55,739 + GFF1862 0.23 +0.5 55,755 - GFF1862 0.24 +1.1 55,791 - GFF1862 0.26 -0.4 55,893 + GFF1862 0.32 -0.6 55,920 + GFF1862 0.34 -1.2 56,141 + GFF1862 0.47 +0.8 56,300 + GFF1862 0.57 -0.2 56,300 + GFF1862 0.57 -0.1 56,300 + GFF1862 0.57 -0.1 56,300 + GFF1862 0.57 -0.2 56,301 - GFF1862 0.57 -1.0 56,301 - GFF1862 0.57 +0.4 56,301 - GFF1862 0.57 -0.1 56,301 - GFF1862 0.57 +0.2 56,301 - GFF1862 0.57 -1.7 56,362 - GFF1862 0.61 +0.3
Or see this region's nucleotide sequence