Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1842 and GFF1843 are separated by 115 nucleotides GFF1843 and GFF1844 are separated by 4 nucleotides
GFF1842 - LysR family transcriptional regulator STM2281, at 32,929 to 33,807
GFF1842
GFF1843 - Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46), at 33,923 to 34,993
GFF1843
GFF1844 - Glycerol-3-phosphate transporter, at 34,998 to 36,356
GFF1844
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1 at 33.004 kb on + strand at 33.005 kb on - strand at 33.068 kb on + strand, within GFF1842 at 33.319 kb on - strand, within GFF1842 at 33.352 kb on - strand, within GFF1842 at 33.387 kb on + strand, within GFF1842 at 33.804 kb on - strand at 33.805 kb on + strand at 33.997 kb on + strand at 33.998 kb on - strand at 33.999 kb on + strand at 33.999 kb on + strand at 34.012 kb on - strand at 34.077 kb on - strand, within GFF1843 at 34.085 kb on - strand, within GFF1843 at 34.157 kb on - strand, within GFF1843 at 34.157 kb on - strand, within GFF1843 at 34.231 kb on - strand, within GFF1843 at 34.236 kb on + strand, within GFF1843 at 34.237 kb on - strand, within GFF1843 at 34.291 kb on - strand, within GFF1843 at 34.291 kb on - strand, within GFF1843 at 34.564 kb on + strand, within GFF1843 at 34.696 kb on - strand, within GFF1843 at 34.865 kb on - strand, within GFF1843 at 34.999 kb on + strand at 35.138 kb on + strand, within GFF1844 at 35.139 kb on - strand, within GFF1844 at 35.139 kb on - strand, within GFF1844 at 35.272 kb on + strand, within GFF1844 at 35.298 kb on - strand, within GFF1844 at 35.298 kb on - strand, within GFF1844 at 35.298 kb on - strand, within GFF1844 at 35.458 kb on + strand, within GFF1844 at 35.587 kb on + strand, within GFF1844 at 35.588 kb on - strand, within GFF1844 at 35.615 kb on - strand, within GFF1844 at 35.784 kb on - strand, within GFF1844 at 35.786 kb on - strand, within GFF1844
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 33,004 + -0.1 33,005 - +0.9 33,068 + GFF1842 0.16 -0.6 33,319 - GFF1842 0.44 -1.1 33,352 - GFF1842 0.48 -0.6 33,387 + GFF1842 0.52 +0.2 33,804 - -0.2 33,805 + +0.1 33,997 + -0.5 33,998 - +0.5 33,999 + +0.1 33,999 + -0.3 34,012 - -0.9 34,077 - GFF1843 0.14 +0.1 34,085 - GFF1843 0.15 +0.2 34,157 - GFF1843 0.22 +0.6 34,157 - GFF1843 0.22 +0.5 34,231 - GFF1843 0.29 +0.5 34,236 + GFF1843 0.29 +0.5 34,237 - GFF1843 0.29 +0.1 34,291 - GFF1843 0.34 -0.9 34,291 - GFF1843 0.34 -0.7 34,564 + GFF1843 0.60 +1.5 34,696 - GFF1843 0.72 -0.3 34,865 - GFF1843 0.88 +0.4 34,999 + +0.5 35,138 + GFF1844 0.10 +0.4 35,139 - GFF1844 0.10 -0.4 35,139 - GFF1844 0.10 -0.1 35,272 + GFF1844 0.20 +1.0 35,298 - GFF1844 0.22 +0.6 35,298 - GFF1844 0.22 -0.2 35,298 - GFF1844 0.22 +0.1 35,458 + GFF1844 0.34 +1.1 35,587 + GFF1844 0.43 +0.4 35,588 - GFF1844 0.43 -0.9 35,615 - GFF1844 0.45 -1.5 35,784 - GFF1844 0.58 +0.2 35,786 - GFF1844 0.58 -0.4
Or see this region's nucleotide sequence